Gm26682 (predicted gene, 26682) - Rat Genome Database

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Gene: Gm26682 (predicted gene, 26682) Mus musculus
Analyze
Symbol: Gm26682
Name: predicted gene, 26682
RGD ID: 9626875
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: Gm38715; predicted gene, 38715
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39185,162,839 - 5,165,731 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl185,108,166 - 5,165,731 (-)EnsemblGRCm39 Ensembl
GRCm38185,162,839 - 5,165,731 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl185,162,839 - 5,165,731 (-)EnsemblGRCm38mm10GRCm38
Celera185,187,223 - 5,198,287 (-)NCBICelera
Cytogenetic Map18A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm26682
78 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:56
Count of miRNA genes:54
Interacting mature miRNAs:55
Transcripts:ENSMUST00000180850
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142127Rafaril_mRafar interacting locus (mouse)Not determined18123108555Mouse
14928307Manh83_mmandible shape 83 (mouse)18126902168Mouse
12801458Intmrm3_mintima/media ratio modifier 3 (mouse)18131720756Mouse
11354953Mom21_mmodifier of Min 21 (mouse)18128893823Mouse
12801462Intim3_mintima modifier 3 (mouse)18131720756Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
13207585Mwmlpt3_mMorris water maze latency to platform, training, 3 (mouse)18133547739Mouse
13207589Mwmlpa3_mMorris water maze latency to platform, all, 3 (mouse)18133547739Mouse
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000180850
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,162,839 - 5,165,731 (-)Ensembl
GRCm38.p6 Ensembl185,162,839 - 5,165,731 (-)Ensembl
Ensembl Acc Id: ENSMUST00000294878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,108,166 - 5,163,344 (-)Ensembl
Ensembl Acc Id: ENSMUST00000294879
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,108,166 - 5,139,226 (-)Ensembl
Ensembl Acc Id: ENSMUST00000294880
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,141,762 - 5,163,626 (-)Ensembl
Ensembl Acc Id: ENSMUST00000294881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,141,759 - 5,163,534 (-)Ensembl
Ensembl Acc Id: ENSMUST00000294882
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,141,813 - 5,163,481 (-)Ensembl
Ensembl Acc Id: ENSMUST00000294883
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,141,763 - 5,161,621 (-)Ensembl
Ensembl Acc Id: ENSMUST00000294884
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,160,468 - 5,165,458 (-)Ensembl
Ensembl Acc Id: ENSMUST00000294885
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,136,450 - 5,139,785 (-)Ensembl
Ensembl Acc Id: ENSMUST00000294886
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,160,499 - 5,163,513 (-)Ensembl
Ensembl Acc Id: ENSMUST00000294887
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,136,451 - 5,139,283 (-)Ensembl
Ensembl Acc Id: ENSMUST00000294888
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,141,747 - 5,142,770 (-)Ensembl
Ensembl Acc Id: ENSMUST00000294889
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,141,762 - 5,142,603 (-)Ensembl
RefSeq Acc Id: NR_153824
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,162,839 - 5,165,731 (-)NCBI
GRCm38185,162,839 - 5,165,731 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097888 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000180850 ENTREZGENE
MGD MGI:5477176 ENTREZGENE
NCBI Gene Gm26682 ENTREZGENE
PhenoGen Gm26682 PhenoGen
RNAcentral URS0000CCDF99 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-02-20 Gm26682  predicted gene, 26682  Gm38715  predicted gene, 38715  Data merged from RGD:10019758 737654 PROVISIONAL