Gm13387 (predicted gene 13387) - Rat Genome Database

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Gene: Gm13387 (predicted gene 13387) Mus musculus
Analyze
Symbol: Gm13387
Name: predicted gene 13387
RGD ID: 9626692
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: D530008I23
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,012,433 - 25,035,499 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,011,617 - 25,071,716 (-)EnsemblGRCm39 Ensembl
GRCm38225,122,421 - 25,145,487 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,122,603 - 25,145,396 (-)EnsemblGRCm38mm10GRCm38
Celera224,849,431 - 24,891,263 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map217.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:24200680   PMID:24316575   PMID:27899360  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:481
Count of miRNA genes:374
Interacting mature miRNAs:419
Transcripts:ENSMUST00000123483, ENSMUST00000131147, ENSMUST00000149619
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125324559Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125324559Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967669127022642Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000123483
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,011,617 - 25,035,539 (-)Ensembl
GRCm38.p6 Ensembl225,122,603 - 25,145,396 (-)Ensembl
Ensembl Acc Id: ENSMUST00000131147
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,031,809 - 25,035,408 (-)Ensembl
GRCm38.p6 Ensembl225,141,797 - 25,145,396 (-)Ensembl
Ensembl Acc Id: ENSMUST00000149619
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,033,829 - 25,035,335 (-)Ensembl
GRCm38.p6 Ensembl225,143,817 - 25,145,323 (-)Ensembl
Ensembl Acc Id: ENSMUST00000317195
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,011,648 - 25,071,648 (-)Ensembl
Ensembl Acc Id: ENSMUST00000317196
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,012,435 - 25,071,716 (-)Ensembl
Ensembl Acc Id: ENSMUST00000317197
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,024,349 - 25,071,643 (-)Ensembl
Ensembl Acc Id: ENSMUST00000317198
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,027,761 - 25,071,634 (-)Ensembl
Ensembl Acc Id: ENSMUST00000317199
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,029,582 - 25,071,603 (-)Ensembl
Ensembl Acc Id: ENSMUST00000317200
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,033,711 - 25,071,672 (-)Ensembl
RefSeq Acc Id: NR_166477
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,031,333 - 25,035,499 (-)NCBI
GRCm38225,141,321 - 25,145,487 (-)NCBI
Sequence:
RefSeq Acc Id: NR_166478
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,026,046 - 25,035,499 (-)NCBI
GRCm38225,136,034 - 25,145,487 (-)NCBI
Sequence:
RefSeq Acc Id: NR_166479
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,012,433 - 25,035,499 (-)NCBI
GRCm38225,122,421 - 25,145,487 (-)NCBI
Sequence:
Promoters
RGD ID:15092317
Promoter ID:EPDNEWNC_M219
Type:initiation region
Name:Gm13387_1
Description:predicted gene 13387 [Source:MGI Symbol;Acc:MGI:3651242]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38225,145,354 - 25,145,414EPDNEWNC
RGD ID:6876546
Promoter ID:EPDNEW_M1724
Type:initiation region
Name:AK085201_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38225,145,396 - 25,145,456EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000087028 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000131147 ENTREZGENE
MGD MGI:3651242 ENTREZGENE
NCBI Gene Gm13387 ENTREZGENE
PhenoGen Gm13387 PhenoGen
RNAcentral URS0001980E83 RNACentral
  URS000198117B RNACentral
  URS000198136E RNACentral