LOC115489760 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC115489760 (U6 spliceosomal RNA) Mus musculus
Analyze
Symbol: LOC115489760 (Ensembl: Gm25404)
Name: U6 spliceosomal RNA (Ensembl:predicted gene, 25404)
RGD ID: 9620908
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: Gm25404; predicted gene, 25404
RGD Orthologs
Human
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39355,455,867 - 55,455,973 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl355,455,867 - 55,455,973 (+)EnsemblGRCm39 Ensembl
GRCm38355,548,446 - 55,548,552 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl355,548,446 - 55,548,552 (+)EnsemblGRCm38mm10GRCm38
Celera355,262,006 - 55,266,961 (+)NCBICelera
Cytogenetic Map3CNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




LOC115489760
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39355,455,867 - 55,455,973 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl355,455,867 - 55,455,973 (+)EnsemblGRCm39 Ensembl
GRCm38355,548,446 - 55,548,552 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl355,548,446 - 55,548,552 (+)EnsemblGRCm38mm10GRCm38
Celera355,262,006 - 55,266,961 (+)NCBICelera
Cytogenetic Map3CNCBI
RNU6-949P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,675,603 - 27,675,709 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,675,603 - 27,675,709 (-)EnsemblGRCh38hg38GRCh38
GRCh37128,002,114 - 28,002,220 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p35.3NCBI
T2T-CHM13v2.0127,516,888 - 27,516,994 (-)NCBIT2T-CHM13v2.0
LOC120100143
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8120,147,539 - 20,147,645 (-)NCBIGRCr8
mRatBN7.2118,328,125 - 18,328,231 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl118,328,125 - 18,328,231 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map1p12NCBI

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Variants in LOC115489760
9 total Variants

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:115
Interacting mature miRNAs:115
Transcripts:ENSMUST00000082970
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 41 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
14746977Manh53_mmandible shape 53 (mouse)33592528069925280Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
15039332Nmrs6_mNAFLD-associated magnetic resonance shift 6 (mouse)33417074168170741Mouse
1301585Cd4ts1_mCD4 T cell subset 1 (mouse)Not determined33970410273704231Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11041901Lmr11b_mleishmaniasis resistance 11b (mouse)33970410273704231Mouse

1 to 10 of 41 rows





RefSeq Transcripts XR_004941644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000082970
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl355,455,867 - 55,455,973 (+)Ensembl
GRCm38.p6 Ensembl355,548,446 - 55,548,552 (+)Ensembl
RefSeq Acc Id: XR_004941644
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39355,455,867 - 55,455,973 (+)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000064904 Ensembl
  ENSMUSG00000119828 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082970 ENTREZGENE
NCBI Gene LOC115489760 ENTREZGENE
PhenoGen LOC115489760 PhenoGen
RNAcentral URS0000674212 RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-19 LOC115489760  U6 spliceosomal RNA  Gm25404  predicted gene, 25404  Symbol and/or name change 5135510 APPROVED