Gm30459 (predicted gene, 30459) - Rat Genome Database

Name: Gm30459
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Gm30459 (predicted gene, 30459) Mus musculus

Analyze

Symbol:

Gm30459

Name:

predicted gene, 30459

RGD ID:

9601342

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	74,415,735 - 74,420,991 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	74,367,063 - 74,421,066 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	74,765,987 - 74,771,243 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	74,765,987 - 74,771,243 (+)	Ensembl	GRCm38		mm10	GRCm38
Celera	7	72,228,949 - 72,234,205 (+)	NCBI		Celera
Cytogenetic Map	7	D1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073

Genomics

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
25314307	Mlh1fc2_m	MLH1 foci count 2 (mouse)					7	6502999	133501729	Mouse
25314305	Vmm6_m	variable multisystem mineralization 6, eye (mouse)					7	61849748	102749207	Mouse
27226778	Femd11_m	femur midshaft diameter 11, 16 week (mouse)					7	56949748	134001729	Mouse
11252140	Fdr1_m	fat response to dietary restriction 1 (mouse)					7	41148820	75148965	Mouse
26884381	Bzwq2_m	bi-zygomatic width QTL 2, 5 week (mouse)					7	65249748	96949207	Mouse
1301784	Ses2_m	salmonella enteritidis susceptibility 2 (mouse)			Not determined		7	67290094	101290240	Mouse
1301663	Skull9_m	skull morphology 9 (mouse)			Not determined		7	57326121	91326352	Mouse
10043926	Bw1n_m	body weight 1 in NSY (mouse)			Not determined		7	45161966	118693530	Mouse
1301383	Aem2_m	anti-erythrocyte autoantibody modifier 2 (mouse)			Not determined		7	64135424	98135653	Mouse
1301514	Rigs1_m	radiation induced gastroschisis 1 (mouse)			Not determined		7	36280015	92394346	Mouse
27095937	Ulnl7_m	ulna length 7, 10 week (mouse)					7	66449748	98349207	Mouse
11565101	Tsve1_m	variable short tail (Tsv) enhancer 1 (mouse)					7	55889508	87142720	Mouse
1300620	Pgia21_m	proteoglycan induced arthritis 21 (mouse)			Not determined		7	67290094	101290240	Mouse
13208555	Lgth10_m	body length 10 (mouse)					7	51649748	125599172	Mouse
26884408	Bzwq13_m	bi-zygomatic width QTL 13, 16 week (mouse)					7	61749748	121399223	Mouse
1300791	Abbp3_m	A/J and C57BL/6 blood pressure 3 (mouse)			Not determined		7	39673887	103510010	Mouse
10054064	Bwq11_m	body weight QTL 11 (mouse)			Not determined		7	51124954	85125093	Mouse
1357752	Tabw_m	tally ho asscoiated body weight (mouse)			Not determined		7	49193278	83193390	Mouse
10053685	Eae43_m	experimental allergic encephalomyelitis susceptibility 43 (mouse)			Not determined		7	51124954	85125093	Mouse
26884404	Huml1_m	humerus length 1, 5 week (mouse)					7	30199425	108999207	Mouse
1301155	Bpq7_m	blood pressure QTL 7 (mouse)			Not determined		7	70143137	104143379	Mouse
1301158	Eae4_m	susceptibility to experimental allergic encephalomyelitis 4 (mouse)			Not determined		7	19147398	141919804	Mouse
10412199	Sst2_m	susceptibility to tuberculosis 2 (mouse)			Not determined		7	18728794	119485380	Mouse
4142212	Png1_m	Postnatal growth 1 (mouse)			Not determined			74326121	92394346	Mouse
1300654	Bomd1_m	bone mineral density 1 (mouse)			Not determined		7	68365595	102365702	Mouse
26884440	Sklq4_m	skull length QTL 4, 5 week (mouse)					7	65249748	126499172	Mouse
27226715	Metcl3_m	metatarsal-calcaneal length 3, 5 week (mouse)					7	67849748	119499223	Mouse
26884444	Sklq8_m	skull length QTL 8, 10 week (mouse)					7	67849748	124199223	Mouse
25823170	Hrsq7_m	host response to SARS QTL 7, log titer (mouse)					7	54819589	116822815	Mouse
1301082	Bbaa16_m	B.burgdorferi-associated arthritis 16 (mouse)			Not determined		7	36280015	116416877	Mouse
1301465	Egrm3_m	early growth rate (mouse)			Not determined		7	57326121	91326352	Mouse
1300952	Hcs1_m	hepatocarcinogenesis susceptibility 1 (mouse)			Not determined		7	57326121	91326352	Mouse
4142319	Powg_m	post-ovarectomy weight gain (mouse)			Not determined			72857105	92582163	Mouse
12792978	Fbmd3_m	femoral bone mineral density 3, females only (mouse)					7	7050288	142367832	Mouse
1301826	Pgia3_m	proteoglycan induced arthritis 3 (mouse)			Not determined		7	67290094	101290240	Mouse
4141805	Sle19_m	systematic lupus erythematosus susceptibility 19 (mouse)			Not determined			30032485	81135653	Mouse
4141929	Chlq18_m	circulating hormone level QTL 18 (mouse)			Not determined		7	41148820	75148965	Mouse
26884418	Bzwq7_m	bi-zygomatic width QTL 7, 10 week (mouse)					7	67849748	105449207	Mouse
10043973	Obq29_m	obesity QTL 29 (mouse)			Not determined		7	72263372	106263372	Mouse
27226751	Femd5_m	femur midshaft diameter 5, 10 week (mouse)					7	53249748	143153737	Mouse
27095933	Ulnl3_m	ulna length 3, 5 week (mouse)					7	73149748	143153737	Mouse
1300722	Sle3_m	systemic lupus erythmatosus susceptibility 3 (mouse)			Not determined		7	3511728	87142720	Mouse
12880417	V125Dq5_m	vitamin D active form serum level QTL 5 (mouse)					7	45249748	79249748	Mouse
12880418	V125Dq6_m	vitamin D active form serum level QTL 6 (mouse)					7	52149748	86149748	Mouse
11532741	Tbrs5_m	tuberculosis resistance 5 (mouse)					7	49159227	83235415	Mouse
1302141	Fcsa6_m	femoral cross-sectional area 6 (mouse)			Not determined		7	48384461	82384607	Mouse
13506750	Tbthq2_m	trabecular bone thickness QTL 2 (mouse)					7	65659748	77549748	Mouse
27095916	Scvln15_m	sacral vertebrae length 2, 16 week (mouse)					7	61749748	123699223	Mouse
12801463	Rta1_m	retinal aging 1 (mouse)					7	67168027	89089989	Mouse
13513914	Heal52_m	wound healing/ regeneration 52 (mouse)					7	73550372	78591455	Mouse
11553865	Stmm1c_m	skin tumor modifier of MSM 1c (mouse)					7	65788986	99788986	Mouse
26884451	Sklq14_m	skull length QTL 14, 16 week (mouse)					7	67849748	124999172	Mouse
11553866	Stmm1d_m	skin tumor modifier of MSM 1d (mouse)					7	65788986	99788986	Mouse
27095910	Pglq13_m	pelvic girdle length QTL 13, 16 week (mouse)					7	73049748	125699172	Mouse
25314303	Vmm4_m	variable multisystem mineralization 4, kidney (mouse)					7	37299425	87049208	Mouse
11553869	Stmm2b_m	skin tumor modifier of MSM 2a (mouse)					7	73725965	107725965	Mouse
27095907	Scvln4_m	sacral vertebrae length 2, 5 week (mouse)					7	69949748	120499223	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_391623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC154397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK140552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000206203

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	74,415,735 - 74,421,060 (+)	Ensembl
GRCm38.p6 Ensembl	7	74,765,987 - 74,771,243 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000327252

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	74,367,063 - 74,421,066 (+)	Ensembl

RefSeq Acc Id:

XR_391623

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	74,415,735 - 74,420,991 (+)	NCBI
GRCm38	7	74,765,987 - 74,771,243 (+)	NCBI

Sequence:

show sequence

TGTGGCCTGTAATGCCTGCAAACTACATGGCATGGTGCCTGAACCATGCAGATGTTCATACATG
TTTGCACCGTTTGGCAGCTCTCTCTGCCTTAGCTCTGGTTTCTGCCATCACCAACGTGGACAGA
ACACATTGGCCATGCTAGCACTATTTGTTCAAAGAAGGTGCCACAGAAGAACTCTGAGATGTTG
GCTCCCTGCCACAAATGTGTAAAACTGCTGAGAAGATTCCTGAAGTGAACCCAGCCCATTCCTC
TATGGGAGTTTGGTAAAGGTCTAGCAACTAAGATTACCAGAGACAAGAAAAGCATCGCCTCCAC
CAAACTTTGGGAAAGCAGAGCTTTGCTTGCCTCCAGCCGACCTGAGACATCTTCCTGCAGGCAA
AGGAGACCAGGTTGCTCTTGCCATGTACACTAGCAGGCCATAACAGGAGGCTTGGCTGGCTCTA
ACAGCTGTCCTGAAGTTTCAATACATCTAGTAGCACTCTATTTATTGCGCTCCTGGCTGTGCCT
GCGGCCTTGTCAGCTGCTGCTGAGTCAGAGGGTAGGTAGTTAATTAAAGTCATGGTGGCACTGT
AGAAATGAAGGACTGGGAAGGTAGCCAGTCTCAGCAGCCCTTGTTACTGGTTCCACTGCCAGGT
CCCAGCAAACAATGCAACCAGTCCCTGTGGAAAGGCCTGTCCCTCCTGGAGTGTTCAGCTCCAA
CAGTGTGGCATTGAACTTTATGAAACTGTGCTCTTGAGTGGAGGGAAAGGAACGGAAGTTCCAT
GGAATGAAGCAAATCACTGTGCAGAGCCTGTGGTCATGGTTTAAAGTGTTGTTGAGCTCCACTC
ATGATAATGCTGCCATTGAGAGAAACTTGCCCAAAAAACTGCTTGTGTGATTCCTGCAACTTCT
TGCCACTTCAGCGGCCTTGGTTTGGTTGGTGAGCTTTGCAGATTCTTCATGATTGAACTACAGT
TGCTGCTTCATGCCTGTGGAGAGGACTAGTCTGCATCTGCTGATTTTTGTCTGGTGTTTGCTAC
AGGATTGAACTACTGACAAAGAAAATTTGAGCTCACCCCCAAGAACTATTGCTAAACAGGTTCA
CTATCCCCGTATCCTAATACCTTTTCTCTTCCACTACCTCTGATGGGTGGTAGGATGGAGGAGA
GGTTGATCCCTTATTAAAATAGACTACAAAAAATTTATGCC

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000108468	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000206203	ENTREZGENE
MGD	MGI:5589618	ENTREZGENE
NCBI Gene	Gm30459	ENTREZGENE
PhenoGen	Gm30459	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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