Cdrt4os2 (CMT1A duplicated region transcript 4, opposite strand 2) - Rat Genome Database

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Gene: Cdrt4os2 (CMT1A duplicated region transcript 4, opposite strand 2) Mus musculus
Analyze
Symbol: Cdrt4os2
Name: CMT1A duplicated region transcript 4, opposite strand 2
RGD ID: 9594466
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: Gm14526
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,839,622 - 62,841,927 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,839,618 - 62,848,784 (-)EnsemblGRCm39 Ensembl
GRCm381162,948,798 - 62,951,379 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,950,425 - 62,951,079 (-)EnsemblGRCm38mm10GRCm38
Celera1169,882,252 - 69,884,541 (-)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1138.84NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cdrt4os2Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cdrt4os2Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cdrt4os2Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:24316575  



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Variants in Cdrt4os2
74 total Variants

Predicted Target Of
Summary Value
Count of predictions:157
Count of miRNA genes:152
Interacting mature miRNAs:155
Transcripts:ENSMUST00000128675
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 58 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse

1 to 10 of 58 rows





RefSeq Transcripts NR_175379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL645847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000128675
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,839,618 - 62,841,954 (-)Ensembl
GRCm38.p6 Ensembl1162,950,425 - 62,951,079 (-)Ensembl
Ensembl Acc Id: ENSMUST00000328171
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,840,624 - 62,848,784 (-)Ensembl
Ensembl Acc Id: ENSMUST00000328172
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,840,624 - 62,841,947 (-)Ensembl
Ensembl Acc Id: ENSMUST00000328173
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,841,064 - 62,841,945 (-)Ensembl
RefSeq Acc Id: NR_175379
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,839,622 - 62,841,927 (-)NCBI
RGD ID:15093940
Promoter ID:EPDNEWNC_M1845
Type:single initiation site
Name:Cdrt4os2_1
Description:CMT1A duplicated region transcript 4, opposite strand 2[Source:MGI Symbol;Acc:MGI:3705321]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381162,951,101 - 62,951,161EPDNEWNC


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000087039 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000128675 ENTREZGENE
MGD MGI:3705321 ENTREZGENE
NCBI Gene Cdrt4os2 ENTREZGENE
PhenoGen Cdrt4os2 PhenoGen
RNAcentral URS0000768DCD RNACentral
  URS00025E34AA RNACentral