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Gene: LOC102029492 (uncharacterized LOC102029492) Chinchilla lanigera

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Symbol:

LOC102029492

Name:

uncharacterized LOC102029492

RGD ID:

8910150

Description:

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

uncharacterized protein LOC102029492

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955467	10,845,588 - 10,847,304 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

LOC102029492
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955467	10,845,588 - 10,847,304 (-)	NCBI	ChiLan1.0	ChiLan1.0

AC055839.2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	5,499,427 - 5,501,006 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	5,499,427 - 5,501,006 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p14 Ensembl	17	5,499,439 - 5,501,145 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	5,402,747 - 5,404,326 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	17	p13.2	NCBI
HuRef	17	5,292,985 - 5,294,462 (-)	NCBI		HuRef
CHM1_1	17	5,412,391 - 5,413,962 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	5,393,165 - 5,394,743 (-)	NCBI		T2T-CHM13v2.0

6330403K07Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	70,922,767 - 70,924,443 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	70,922,767 - 70,924,339 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	71,031,941 - 71,033,617 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	71,031,941 - 71,033,513 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	70,845,443 - 70,847,119 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	70,848,145 - 70,849,650 (-)	NCBI		MGSCv36	mm8
Celera	11	78,586,375 - 78,588,051 (-)	NCBI		Celera
Cytogenetic Map	11	B4	NCBI
cM Map	11	43.21	NCBI

6330403K07Rikl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	56,254,187 - 56,255,738 (-)	NCBI		GRCr8
mRatBN7.2	10	55,755,611 - 55,757,162 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	55,755,612 - 55,757,162 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	60,435,298 - 60,436,849 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	59,923,817 - 59,925,368 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	55,422,905 - 55,424,456 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	57,669,529 - 57,671,080 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	57,669,530 - 57,671,080 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	57,414,743 - 57,416,295 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	57,937,437 - 57,938,989 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	54,901,313 - 54,902,865 (-)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

LOC117974258
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	13,110,694 - 13,111,129 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	15,078,924 - 15,079,533 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	5,548,473 - 5,549,092 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

LOC100688504
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	31,307,564 - 31,309,043 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	31,445,795 - 31,447,192 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	31,412,407 - 31,413,803 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	5	31,377,943 - 31,379,339 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	31,336,876 - 31,338,268 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	31,513,265 - 31,514,661 (+)	NCBI		UU_Cfam_GSD_1.0

LOC106145267
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	53,581,582 - 53,583,329 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936677	2,317,654 - 2,319,393 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC110256101
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	12	51,501,172 - 51,503,583 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

LOC103242238
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	4,912,610 - 4,914,346 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666059	16,673,662 - 16,676,025 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LOC106010436
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624786	9,293,134 - 9,294,811 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005399651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013522024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01051586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDK01281126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005399651 ⟹ XP_005399708

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955467	10,845,588 - 10,847,304 (-)	NCBI

Sequence:

show sequence

CTGGCCAGGCATCTGCAGGAGAGAGAATCAACCTCTGCAACAGGCTGCGGGCGGAAGGCGGAGCCCGGGGAAGCTACTGCTTCGCTGAGAGGCCCAACAGACCCTGCAGAGGCCCCCTGCCTCGCTGG
CTCCGCCCCCTCCACCTCTGGCGATAGAAATTCGCCTCTGCGTCTGCGGCTGCCCACTGCGCTCAGACAGGTCCTACCGTGGACGGAGCACCCAGACTGCGCTGACCCTTCTACCTGTGCTAGGTGCC
AATGGCTGACGGACTCTTTCAGCGCAAGCCCTGGGGCGCGGAGCAGATGCGCTCCGACTCAGACCCTGAGTCGGAGGGCCTATTTGACAAGCCTCCTCCGGAAGAGCCCTGCGTGCCCAAGTCGGGGT
CGGCCGCTGGCAAAGGAGCTGGTCGGCGCGCAGGCGGAAAGGCGCAGGGAGCCCGCACTGGGCAGCCCCCGAAGGCCGCTGCGAGCACCCCTCCCGAAGAGGAGACGACTCCACTGGACGAGGGCTGC
TATCTCGACCATTTTCCGCACCTCTCCATCTTTATCTACGCGGCCATCGCCTTCTCCATCACCTCCTGCATCTTTACCTATATCCATTTACAGCTTGTCTGAGTGGCCAGGGCAGGGCGGGGTGGGCG
CAGGGCTGACGTGGGAGGGAGGATAAAAGAAGGGTTTAGTATTTTTGGTTTTGAAATGCACTGCACCCCCCCTTCGCCTAACTTTTGATGCTGTATCTTTCCATGTTGATGCTTTTTGTCTAATTGTC
CATCTGTTAAAAGGTTCAAAGTACTGTATCTGCCGGAAATTAAATAACTGCTTTTCGCACCTGCCGGTGGGGACCGGGACACAGACTTAATGTTTAGAAATCCGTAGTGCGTTTGAATCCATTTGTAA
TTAGGGTTATGTCTCTGTGCGCTTACTTCGTGATGTGGGGACACGAGCAGCAGAGAGCCCAGCATTTTGTATTTGGGGAGCGCAGAGCAAGCCTGACCTTCTGTTCCTTAAGGGATGAGCCAGGTCTG
GACCTCCGACCTTCCCCAGCGGGTAAGGTCGTGCTCTGGGCCCAAATGGGCTGGAGCCCTGGGATGCTGCATTGCCCCCAGGAGGAGCTGGCTGTGCTCGGAGGACCTGGTCACTCAGCGGGCTCTGC
TGGAGCTGGGTCAGGCTTTGCTATCGCTGCCAGATGGAGGCAAGACCAGTACAGAAGAGCTGTCCTACCAAAAAGCCATGCCCAGGACGTGTCCTGACCTCGTGGGACTTTCGGCTGCAGACCTCTGG
AACACAGGCCAAGCTCCTGTGCTCCGCTGGATGAGACTGGGGCCCTGGCTGGGGAGGGCGGTACCTAGAGACTCTGGAGGGCTTCATTCTGGGGCGGAGCCCTTCTGGAGCTATGAGAACCAAAATGA
AGGGGTTGGGGGATGTCAATAACAAGAGTTGCTGCTGGGGTTTGCCATCTCCAATGCAAAAGGCCTAATACCAGAACCCACCTTGGCAGGTTATTCTACTCATCTGCCTTCTTTGTTTCTTCAAGAAT
GTCAAATGTCCAAATGTGGCGCTTTAATACTGCATATATACCTATGGAAATGTCTGTAATTGTGTTATCTCTAATGGAGTAAAGTACCTTTTACGTCTCCTCTG

hide sequence

RefSeq Acc Id:

XM_013522024 ⟹ XP_013377478

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955467	10,845,588 - 10,846,695 (-)	NCBI

Sequence:

show sequence

TCTGAGTGGCCAGGGCAGGGCGGGGTGGGCGCAGGGCTGACGTGGGAGGGAGGATAAAAGAAGGGTTTAGTATTTTTGGTTTTGAAATGCACTGCACCCCCCCTTCGCCTAACTTTTGATGCTGTATC
TTTCCATGTTGATGCTTTTTGTCTAATTGTCCATCTGTTAAAAGGTTCAAAGTACTGTATCTGCCGGAAATTAAATAACTGCTTTTCGCACCTGCCGGTGGGGACCGGGACACAGACTTAATGTTTAG
AAATCCGTAGTGCGTTTGAATCCATTTGTAATTAGGGTTATGTCTCTGTGCGCTTACTTCGTGATGTGGGGACACGAGCAGCAGAGAGCCCAGCATTTTGTATTTGGGGAGCGCAGAGCAAGCCTGAC
CTTCTGTTCCTTAAGGGATGAGCCAGGTCTGGACCTCCGACCTTCCCCAGCGGGTAAGGTCGTGCTCTGGGCCCAAATGGGCTGGAGCCCTGGGATGCTGCATTGCCCCCAGGAGGAGCTGGCTGTGC
TCGGAGGACCTGGTCACTCAGCGGGCTCTGCTGGAGCTGGGTCAGGCTTTGCTATCGCTGCCAGATGGAGGCAAGACCAGTACAGAAGAGCTGTCCTACCAAAAAGCCATGCCCAGGACGTGTCCTGA
CCTCGTGGGACTTTCGGCTGCAGACCTCTGGAACACAGGCCAAGCTCCTGTGCTCCGCTGGATGAGACTGGGGCCCTGGCTGGGGAGGGCGGTACCTAGAGACTCTGGAGGGCTTCATTCTGGGGCGG
AGCCCTTCTGGAGCTATGAGAACCAAAATGAAGGGGTTGGGGGATGTCAATAACAAGAGTTGCTGCTGGGGTTTGCCATCTCCAATGCAAAAGGCCTAATACCAGAACCCACCTTGGCAGGTTATTCT
ACTCATCTGCCTTCTTTGTTTCTTCAAGAATGTCAAATGTCCAAATGTGGCGCTTTAATACTGCATATATACCTATGGAAATGTCTGTAATTGTGTTATCTCTAATGGAGTAAAGTACCTTTTACGTC
TCCTCTG

hide sequence


Protein RefSeqs	XP_005399708	(Get FASTA)	NCBI Sequence Viewer
	XP_013377478	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005399708 ⟸ XM_005399651
- Peptide Label:	isoform X2
- Sequence:	show sequence MADGLFQRKPWGAEQMRSDSDPESEGLFDKPPPEEPCVPKSGSAAGKGAGRRAGGKAQGARTGQPPKAAASTPPEEETTPLDEGCYLDHFPHLSIFIYAAIAFSITSCIFTYIHLQLV hide sequence

RefSeq Acc Id:	XP_013377478 ⟸ XM_013522024
- Peptide Label:	isoform X1
- Sequence:	show sequence MSQVWTSDLPQRVRSCSGPKWAGALGCCIAPRRSWLCSEDLVTQRALLELGQALLSLPDGGKTSTEELSYQKAMPRTCPDLVGLSAADLWNTGQAPVLRWMRLGPWLGRAVPRDSGGLHSGAEPFWSY ENQNEGVGGCQ hide sequence

Database	Acc Id	Source(s)
NCBI Gene	LOC102029492	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-25	LOC102029492	uncharacterized LOC102029492		menin-like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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