Pibf1 (progesterone immunomodulatory binding factor 1) - Rat Genome Database

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Gene: Pibf1 (progesterone immunomodulatory binding factor 1) Chinchilla lanigera
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Symbol: Pibf1
Name: progesterone immunomodulatory binding factor 1
RGD ID: 8851127
Description: ENCODES a protein that exhibits identical protein binding (ortholog); interleukin-4 receptor binding (ortholog); INVOLVED IN activation of Janus kinase activity (ortholog); cilium assembly (ortholog); mitotic metaphase chromosome alignment (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); Dandy-Walker syndrome (ortholog); Encephalocele (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: progesterone-induced-blocking factor 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540433,714,193 - 33,897,622 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540433,713,903 - 33,897,622 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Pibf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540433,714,193 - 33,897,622 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540433,713,903 - 33,897,622 (-)NCBIChiLan1.0ChiLan1.0
PIBF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381372,782,133 - 73,016,461 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1372,782,133 - 73,016,461 (+)EnsemblGRCh38hg38GRCh38
GRCh371373,356,271 - 73,590,599 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361372,254,231 - 72,488,593 (+)NCBINCBI36Build 36hg18NCBI36
Build 341372,254,230 - 72,488,593NCBI
Celera1354,254,692 - 54,489,071 (+)NCBICelera
Cytogenetic Map13q21.33-q22.1NCBI
HuRef1354,053,569 - 54,287,899 (+)NCBIHuRef
CHM1_11373,323,943 - 73,558,232 (+)NCBICHM1_1
T2T-CHM13v2.01372,003,616 - 72,238,006 (+)NCBIT2T-CHM13v2.0
Pibf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391499,336,892 - 99,492,335 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1499,336,860 - 99,491,929 (+)EnsemblGRCm39 Ensembl
GRCm381499,099,424 - 99,254,899 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1499,099,424 - 99,254,493 (+)EnsemblGRCm38mm10GRCm38
MGSCv371499,498,652 - 99,653,712 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361497,982,567 - 98,137,627 (+)NCBIMGSCv36mm8
Celera1497,775,191 - 97,930,507 (+)NCBICelera
Cytogenetic Map14E2.2NCBI
cM Map1449.27NCBI
Pibf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81582,258,243 - 82,427,546 (+)NCBIGRCr8
mRatBN7.21575,850,389 - 76,019,711 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1575,850,624 - 76,019,712 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1579,835,580 - 80,005,096 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01580,912,198 - 81,081,705 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01577,859,742 - 78,029,260 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01583,494,110 - 83,663,202 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1583,495,377 - 83,663,143 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01587,005,462 - 87,172,130 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41582,881,953 - 83,056,944 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11582,898,831 - 83,072,408 (+)NCBI
Celera1575,091,001 - 75,260,927 (+)NCBICelera
Cytogenetic Map15q21NCBI
PIBF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21474,361,897 - 74,598,598 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11372,953,219 - 73,190,395 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01354,011,239 - 54,247,952 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11372,787,220 - 73,022,473 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1372,788,608 - 73,022,473 (+)Ensemblpanpan1.1panPan2
PIBF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12226,935,390 - 27,133,308 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2226,936,567 - 27,133,308 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2226,791,190 - 26,988,956 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02227,266,788 - 27,464,812 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2227,266,852 - 27,464,818 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12226,928,764 - 27,126,561 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02226,968,252 - 27,166,039 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02227,039,625 - 27,237,472 (+)NCBIUU_Cfam_GSD_1.0
Pibf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945132,443,686 - 132,665,523 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365117,860,590 - 8,081,525 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365117,860,552 - 8,082,850 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIBF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1145,076,062 - 45,362,887 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11145,076,046 - 45,362,708 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21149,486,085 - 49,506,698 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PIBF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1351,916,787 - 52,153,018 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660468,014,005 - 8,256,818 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pibf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475127,543,702 - 27,759,271 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475127,543,768 - 27,760,536 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000003887   ⟹   ENSCLAP00000003811
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540433,714,193 - 33,896,313 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000003888   ⟹   ENSCLAP00000003812
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540433,720,962 - 33,897,622 (-)Ensembl
RefSeq Acc Id: XM_005374185   ⟹   XP_005374242
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540433,713,903 - 33,897,622 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005374186   ⟹   XP_005374243
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540433,713,903 - 33,897,337 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005374187   ⟹   XP_005374244
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540433,721,073 - 33,897,622 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516628   ⟹   XP_013372082
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540433,713,903 - 33,897,622 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005374242   ⟸   XM_005374185
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UP92 (UniProtKB/TrEMBL),   A0A8C2UP95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005374243   ⟸   XM_005374186
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UP92 (UniProtKB/TrEMBL),   A0A8C2UP95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005374244   ⟸   XM_005374187
- Peptide Label: isoform X3
- UniProtKB: A0A8C2UP95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013372082   ⟸   XM_013516628
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UP95 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000003811   ⟸   ENSCLAT00000003887
Ensembl Acc Id: ENSCLAP00000003812   ⟸   ENSCLAT00000003888


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002713 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003887 ENTREZGENE
  ENSCLAT00000003887.1 UniProtKB/TrEMBL
  ENSCLAT00000003888 ENTREZGENE
  ENSCLAT00000003888.1 UniProtKB/TrEMBL
InterPro PIBF1 UniProtKB/TrEMBL
NCBI Gene Pibf1 ENTREZGENE
PANTHER PROGESTERONE-INDUCED-BLOCKING FACTOR 1 UniProtKB/TrEMBL
  PTHR18950 UniProtKB/TrEMBL
UniProt A0A8C2UP92 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UP95 ENTREZGENE, UniProtKB/TrEMBL