Cc2d2b (coiled-coil and C2 domain containing 2B) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Cc2d2b (coiled-coil and C2 domain containing 2B) Chinchilla lanigera
Analyze
Symbol: Cc2d2b
Name: coiled-coil and C2 domain containing 2B
RGD ID: 8818607
Description: ASSOCIATED WITH agammaglobulinemia 4 (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown open reading frame, human C10orf131; LOC102029883
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555072,170,828 - 2,260,580 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555072,160,454 - 2,262,333 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cc2d2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555072,170,828 - 2,260,580 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555072,160,454 - 2,262,333 (+)NCBIChiLan1.0ChiLan1.0
CC2D2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381095,907,671 - 96,033,745 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1095,907,603 - 96,033,745 (+)EnsemblGRCh38hg38GRCh38
GRCh371097,667,732 - 97,793,502 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361097,749,873 - 97,782,431 (+)NCBINCBI36Build 36hg18NCBI36
Build 341097,723,775 - 97,782,422NCBI
Celera1091,501,058 - 91,533,652 (+)NCBICelera
Cytogenetic Map10q24.1NCBI
HuRef1091,348,895 - 91,371,339 (+)NCBIHuRef
HuRef1091,387,428 - 91,420,011 (+)NCBIHuRef
CHM1_11098,041,709 - 98,074,282 (+)NCBICHM1_1
T2T-CHM13v2.01096,786,760 - 96,913,054 (+)NCBIT2T-CHM13v2.0
Cc2d2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391940,737,197 - 40,818,227 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1940,737,197 - 40,816,187 (+)EnsemblGRCm39 Ensembl
GRCm381940,748,753 - 40,829,778 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1940,748,753 - 40,827,743 (+)EnsemblGRCm38mm10GRCm38
MGSCv371940,839,924 - 40,901,848 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361940,802,227 - 40,880,669 (+)NCBIMGSCv36mm8
Celera1941,567,002 - 41,630,424 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1934.26NCBI
Cc2d2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81249,509,371 - 249,608,894 (+)NCBIGRCr8
mRatBN7.21239,561,506 - 239,655,771 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1239,561,987 - 239,682,416 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01259,998,744 - 260,092,810 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01267,281,331 - 267,367,424 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01267,441,913 - 267,533,809 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41245,907,430 - 245,993,371 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11246,007,581 - 246,107,846 (+)NCBI
Celera1235,406,811 - 235,501,002 (+)NCBICelera
Cytogenetic Map1q54NCBI
CC2D2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28107,767,653 - 107,937,968 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110107,772,971 - 107,943,289 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01092,520,578 - 92,644,989 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11096,026,714 - 96,149,372 (+)NCBIpanpan1.1PanPan1.1panPan2
CC2D2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1289,371,454 - 9,480,331 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl289,447,040 - 9,480,252 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha289,557,020 - 9,665,230 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0289,643,606 - 9,751,777 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1289,352,276 - 9,460,511 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0289,411,811 - 9,519,678 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0289,555,113 - 9,663,312 (+)NCBIUU_Cfam_GSD_1.0
Cc2d2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721337,383,210 - 37,479,177 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366363,423,251 - 3,506,153 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366363,422,998 - 3,458,276 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CC2D2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14107,414,080 - 107,506,045 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114107,411,853 - 107,506,054 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214117,085,690 - 117,140,085 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CC2D2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1989,065,329 - 89,193,297 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604849,936,925 - 50,068,931 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cc2d2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247377,300,871 - 7,418,559 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247377,298,646 - 7,417,751 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005407556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01065580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01065581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01065582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01065583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDK01197876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000004195   ⟹   ENSCLAP00000004114
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555072,170,828 - 2,260,580 (+)Ensembl
RefSeq Acc Id: XM_005407556   ⟹   XP_005407613
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555072,178,856 - 2,262,333 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506214   ⟹   XP_013361668
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555072,160,454 - 2,262,333 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506215   ⟹   XP_013361669
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555072,160,454 - 2,262,333 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506216   ⟹   XP_013361670
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555072,160,454 - 2,262,333 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506217   ⟹   XP_013361671
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555072,160,454 - 2,262,333 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506218   ⟹   XP_013361672
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555072,160,454 - 2,262,333 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506219   ⟹   XP_013361673
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555072,167,144 - 2,262,333 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506220   ⟹   XP_013361674
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555072,160,454 - 2,258,154 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506221   ⟹   XP_013361675
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555072,160,454 - 2,248,037 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506222   ⟹   XP_013361676
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555072,174,368 - 2,262,333 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506223   ⟹   XP_013361677
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555072,193,566 - 2,262,333 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506224   ⟹   XP_013361678
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555072,205,404 - 2,262,333 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005407613   ⟸   XM_005407556
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_013361668   ⟸   XM_013506214
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013361670   ⟸   XM_013506216
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013361672   ⟸   XM_013506218
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013361669   ⟸   XM_013506215
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361671   ⟸   XM_013506217
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013361674   ⟸   XM_013506220
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_013361675   ⟸   XM_013506221
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_013361673   ⟸   XM_013506219
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013361676   ⟸   XM_013506222
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_013361677   ⟸   XM_013506223
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_013361678   ⟸   XM_013506224
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: ENSCLAP00000004114   ⟸   ENSCLAT00000004195
Protein Domains
DUF5523


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002936 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004195.1 UniProtKB/TrEMBL
InterPro DUF5523 UniProtKB/TrEMBL
NCBI Gene Cc2d2b ENTREZGENE
PANTHER CENTROSOMAL PROTEIN-RELATED UniProtKB/TrEMBL
  PROTEIN CC2D2B UniProtKB/TrEMBL
Pfam DUF5523 UniProtKB/TrEMBL
UniProt A0A8C2YJW9_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-21 Cc2d2b  coiled-coil and C2 domain containing 2B  LOC102029883  chromosome unknown open reading frame, human C10orf131  Data merged from RGD:9064169 737654 PROVISIONAL