Crmp1 (collapsin response mediator protein 1) - Rat Genome Database

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Gene: Crmp1 (collapsin response mediator protein 1) Chinchilla lanigera
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Symbol: Crmp1
Name: collapsin response mediator protein 1
RGD ID: 8811564
Description: ENCODES a protein that exhibits filamin binding (ortholog); identical protein binding (ortholog); phosphoprotein binding (ortholog); INVOLVED IN negative regulation of neuron projection development (ortholog); neuron development (ortholog); regulation of postsynapse assembly (ortholog); ASSOCIATED WITH tooth and nail syndrome (ortholog); FOUND IN actin cytoskeleton (ortholog); centrosome (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dihydropyrimidinase-related protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555144,212,872 - 4,274,054 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555144,216,575 - 4,273,947 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Crmp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555144,212,872 - 4,274,054 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555144,216,575 - 4,273,947 (+)NCBIChiLan1.0ChiLan1.0
CRMP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3845,820,764 - 5,893,086 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl45,748,084 - 5,893,086 (-)EnsemblGRCh38hg38GRCh38
GRCh3745,822,491 - 5,894,813 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3645,873,392 - 5,945,686 (-)NCBINCBI36Build 36hg18NCBI36
Build 3445,940,582 - 6,008,280NCBI
Celera45,720,438 - 5,793,799 (-)NCBICelera
Cytogenetic Map4p16.2NCBI
HuRef45,758,400 - 5,829,702 (-)NCBIHuRef
CHM1_145,820,444 - 5,892,754 (-)NCBICHM1_1
T2T-CHM13v2.045,792,373 - 5,864,846 (-)NCBIT2T-CHM13v2.0
Crmp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39537,399,402 - 37,449,507 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl537,399,284 - 37,449,477 (+)EnsemblGRCm39 Ensembl
GRCm38537,242,058 - 37,292,163 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl537,241,940 - 37,292,133 (+)EnsemblGRCm38mm10GRCm38
MGSCv37537,633,319 - 37,683,372 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36537,534,041 - 37,580,382 (+)NCBIMGSCv36mm8
Celera534,689,445 - 34,741,856 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map519.96NCBI
Crmp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81477,734,675 - 77,780,916 (-)NCBIGRCr8
mRatBN7.21473,509,933 - 73,556,192 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1473,509,933 - 73,556,177 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1477,955,568 - 78,001,446 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01479,196,416 - 79,242,292 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01475,641,005 - 75,687,147 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01478,266,931 - 78,312,777 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1478,266,931 - 78,308,933 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01478,240,967 - 78,286,807 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41479,076,301 - 79,118,421 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11479,078,691 - 79,120,812 (-)NCBI
Celera1472,461,187 - 72,503,186 (-)NCBICelera
Cytogenetic Map14q21NCBI
CRMP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v236,090,581 - 6,162,136 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan146,019,127 - 6,090,701 (-)NCBINHGRI_mPanPan1
PanPan1.145,900,971 - 5,946,767 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl45,900,971 - 5,969,910 (-)Ensemblpanpan1.1panPan2
CRMP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1371,009,382 - 71,077,814 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl371,010,299 - 71,082,216 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha373,560,063 - 73,632,909 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0371,770,327 - 71,843,339 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl371,770,330 - 71,843,338 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1371,040,716 - 71,113,651 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0371,201,898 - 71,274,671 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0371,579,399 - 71,652,234 (-)NCBIUU_Cfam_GSD_1.0
Crmp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528564,295,522 - 64,353,713 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647717,996,462 - 18,055,405 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647717,997,213 - 18,035,266 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRMP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl84,734,200 - 4,805,644 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.184,734,175 - 4,805,647 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.282,412,175 - 2,478,102 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRMP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12741,953,422 - 42,024,574 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2741,954,417 - 42,019,751 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604788,748,217 - 88,819,471 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Crmp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475522,484,731 - 22,540,976 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475522,484,725 - 22,541,032 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000010823   ⟹   ENSCLAP00000010691
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555144,212,872 - 4,273,061 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000010824   ⟹   ENSCLAP00000010692
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555144,216,575 - 4,274,054 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000010825   ⟹   ENSCLAP00000010693
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555144,235,485 - 4,273,016 (+)Ensembl
RefSeq Acc Id: XM_005408820   ⟹   XP_005408877
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555144,216,575 - 4,273,947 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005408877 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010691.1
  ENSCLAP00000010692
  ENSCLAP00000010692.1
  ENSCLAP00000010693.1
RefSeq Acc Id: XP_005408877   ⟸   XM_005408820
- UniProtKB: A0A8C2YN21 (UniProtKB/TrEMBL),   A0A8C2YN16 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000010693   ⟸   ENSCLAT00000010825
Ensembl Acc Id: ENSCLAP00000010691   ⟸   ENSCLAT00000010823
Ensembl Acc Id: ENSCLAP00000010692   ⟸   ENSCLAT00000010824
Protein Domains
Amidohydrolase-related


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007378 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010823.1 UniProtKB/TrEMBL
  ENSCLAT00000010824 ENTREZGENE
  ENSCLAT00000010824.1 UniProtKB/TrEMBL
  ENSCLAT00000010825.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.40.10 UniProtKB/TrEMBL
  Metal-dependent hydrolases UniProtKB/TrEMBL
InterPro Amidohydro-rel UniProtKB/TrEMBL
  Hydantoinase/dihydroPyrase UniProtKB/TrEMBL
  Metal-dep_hydrolase_composite UniProtKB/TrEMBL
  Metal_Hydrolase UniProtKB/TrEMBL
  Metallo-dep_Hydrolases_sf UniProtKB/TrEMBL
NCBI Gene Crmp1 ENTREZGENE
PANTHER HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER UniProtKB/TrEMBL
  PTHR11647:SF54 UniProtKB/TrEMBL
Pfam Amidohydro_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF51338 UniProtKB/TrEMBL
  SSF51556 UniProtKB/TrEMBL
UniProt A0A8C2V613_CHILA UniProtKB/TrEMBL
  A0A8C2YN16 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YN21 ENTREZGENE, UniProtKB/TrEMBL