Tmlhe (trimethyllysine hydroxylase, epsilon) - Rat Genome Database

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Gene: Tmlhe (trimethyllysine hydroxylase, epsilon) Chinchilla lanigera
Analyze
Symbol: Tmlhe
Name: trimethyllysine hydroxylase, epsilon
RGD ID: 8738210
Description: ENCODES a protein that exhibits oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (ortholog); trimethyllysine dioxygenase activity (ortholog); INVOLVED IN carnitine biosynthetic process (ortholog); negative regulation of oxidoreductase activity (ortholog); PARTICIPATES IN carnitine biosynthetic pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); Agenesis of Corpus Callosum (ortholog); autistic disorder (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: trimethyllysine dioxygenase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955594272,646 - 331,757 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955594272,668 - 329,997 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tmlhe
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955594272,646 - 331,757 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955594272,668 - 329,997 (+)NCBIChiLan1.0ChiLan1.0
TMLHE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X155,489,011 - 155,612,952 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX155,489,011 - 155,719,098 (-)EnsemblGRCh38hg38GRCh38
GRCh37X154,718,672 - 154,842,613 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X154,372,967 - 154,495,791 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X154,283,476 - 154,406,301NCBI
CeleraX154,736,459 - 154,739,995 (+)NCBICelera
CeleraX154,903,691 - 154,996,305 (-)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX143,232,719 - 143,323,711 (-)NCBIHuRef
CHM1_1X154,630,300 - 154,754,464 (-)NCBICHM1_1
T2T-CHM13v2.0X153,718,334 - 153,838,175 (-)NCBIT2T-CHM13v2.0
Tmlhe
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Cytogenetic MapX NCBI
Tmlhe
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82096,561 - 144,414 (+)NCBIGRCr8
mRatBN7.22091,234 - 138,942 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2091,272 - 140,386 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx20100,768 - 153,428 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.020104,240 - 156,894 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02099,724 - 147,338 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.020237,461 - 285,125 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl20237,506 - 284,943 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.020231,244 - 279,207 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4208,623 - 56,125 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12019,571 - 56,039 (+)NCBI
Celera20963,069 - 1,011,108 (+)NCBICelera
Cytogenetic Map20p12NCBI
TMLHE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X155,455,887 - 155,580,231 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X155,447,729 - 155,583,817 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X144,956,906 - 145,081,204 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X154,870,199 - 154,976,780 (-)NCBIpanpan1.1PanPan1.1panPan2
TMLHE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X123,322,773 - 123,438,999 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX123,324,729 - 123,438,947 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX108,309,388 - 108,425,608 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X126,454,187 - 126,569,036 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X122,191,346 - 122,307,568 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X124,713,751 - 124,830,273 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X124,445,149 - 124,561,391 (-)NCBIUU_Cfam_GSD_1.0
Tmlhe
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X120,209,145 - 120,330,205 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493695864,713 - 113,627 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMLHE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX125,598,116 - 125,673,669 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X125,601,920 - 125,673,716 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X142,728,254 - 142,800,047 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMLHE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X129,628,788 - 129,729,616 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX129,626,286 - 129,729,592 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606567,704,658 - 67,816,724 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmlhe
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624980310,426 - 406,972 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624980310,630 - 407,364 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000000643   ⟹   ENSCLAP00000000611
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955594272,646 - 331,757 (+)Ensembl
RefSeq Acc Id: XM_005414642   ⟹   XP_005414699
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955594272,668 - 329,997 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013510005   ⟹   XP_013365459
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955594272,668 - 329,997 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005414699 (Get FASTA)   NCBI Sequence Viewer  
  XP_013365459 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000000611
  ENSCLAP00000000611.1
RefSeq Acc Id: XP_005414699   ⟸   XM_005414642
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UIF9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013365459   ⟸   XM_013510005
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSCLAP00000000611   ⟸   ENSCLAT00000000643

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000490 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000000643 ENTREZGENE
  ENSCLAT00000000643.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.2020.30 UniProtKB/TrEMBL
  3.60.130.10 UniProtKB/TrEMBL
InterPro AlphaKG_dependent_hydroxylases UniProtKB/TrEMBL
  GBBH-like_N UniProtKB/TrEMBL
  GBBH-like_N_sf UniProtKB/TrEMBL
  TauD-like_sf UniProtKB/TrEMBL
  TauD/TfdA-like UniProtKB/TrEMBL
  Trimethyllysine_dOase UniProtKB/TrEMBL
NCBI Gene Tmlhe ENTREZGENE
PANTHER GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED UniProtKB/TrEMBL
  TRIMETHYLLYSINE DIOXYGENASE, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam GBBH-like_N UniProtKB/TrEMBL
  TauD UniProtKB/TrEMBL
Superfamily-SCOP Clavaminate synthase-like UniProtKB/TrEMBL
UniProt A0A8C2UIF9 ENTREZGENE, UniProtKB/TrEMBL