LINC01491 (long intergenic non-protein coding RNA 1491) - Rat Genome Database

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Gene: LINC01491 (long intergenic non-protein coding RNA 1491) Homo sapiens
Analyze
Symbol: LINC01491
Name: long intergenic non-protein coding RNA 1491
RGD ID: 8695235
HGNC Page HGNC:51148
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381547,803,384 - 47,846,236 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1547,774,219 - 47,846,266 (-)EnsemblGRCh38hg38GRCh38
GRCh371548,095,581 - 48,138,433 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q21.1NCBI
HuRef1524,952,354 - 24,970,996 (-)NCBIHuRef
CHM1_11548,237,983 - 48,256,656 (-)NCBICHM1_1
T2T-CHM13v2.01545,611,420 - 45,654,294 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LINC01491
1 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 15q21.1-21.2(chr15:47460844-52494222)x1 copy number loss See cases [RCV000135639] Chr15:47460844..52494222 [GRCh38]
Chr15:47753041..52786419 [GRCh37]
Chr15:45540333..50573711 [NCBI36]
Chr15:15q21.1-21.2		 pathogenic
GRCh38/hg38 15q21.1-21.3(chr15:46042302-54195828)x1 copy number loss See cases [RCV000051619] Chr15:46042302..54195828 [GRCh38]
Chr15:46334500..54488025 [GRCh37]
Chr15:44121792..52275317 [NCBI36]
Chr15:15q21.1-21.3		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:405
Count of miRNA genes:334
Interacting mature miRNAs:349
Transcripts:ENST00000558434, ENST00000558792, ENST00000561238
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1 90
Low 1 1 1 3 1 1 276 9 1
Below cutoff 71 57 55 17 49 16 245 49 280 36 75 94 4 36 168 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000558434
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1547,819,628 - 47,844,956 (-)Ensembl
RefSeq Acc Id: ENST00000558792
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1547,774,219 - 47,846,250 (-)Ensembl
RefSeq Acc Id: ENST00000561238
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1547,814,001 - 47,846,260 (-)Ensembl
RefSeq Acc Id: ENST00000651940
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1547,774,234 - 47,846,242 (-)Ensembl
RefSeq Acc Id: ENST00000652887
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1547,814,001 - 47,846,257 (-)Ensembl
RefSeq Acc Id: ENST00000653152
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1547,774,219 - 47,846,260 (-)Ensembl
RefSeq Acc Id: ENST00000654238
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1547,774,223 - 47,846,242 (-)Ensembl
RefSeq Acc Id: ENST00000656461
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1547,790,661 - 47,846,250 (-)Ensembl
RefSeq Acc Id: ENST00000657527
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1547,774,219 - 47,846,250 (-)Ensembl
RefSeq Acc Id: ENST00000658874
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1547,819,628 - 47,846,266 (-)Ensembl
RefSeq Acc Id: ENST00000668869
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1547,819,628 - 47,846,242 (-)Ensembl
RefSeq Acc Id: ENST00000669298
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1547,774,219 - 47,846,256 (-)Ensembl
RefSeq Acc Id: ENST00000669602
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1547,774,219 - 47,846,256 (-)Ensembl
RefSeq Acc Id: ENST00000669849
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1547,774,219 - 47,846,242 (-)Ensembl
RefSeq Acc Id: ENST00000671085
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1547,774,219 - 47,846,245 (-)Ensembl
RefSeq Acc Id: NR_120336
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381547,803,384 - 47,846,236 (-)NCBI
CHM1_11548,213,796 - 48,256,663 (-)NCBI
T2T-CHM13v2.01545,611,420 - 45,654,294 (-)NCBI
Sequence:
Promoters
RGD ID:15096889
Promoter ID:EPDNEWNC_H1714
Type:initiation region
Name:LINC01491_1
Description:long intergenic non-protein coding RNA 1491 [Source:HGNCSymbol;Acc:HGNC:51148]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381547,846,242 - 47,846,302EPDNEWNC

Additional Information

Database Acc Id Source(s)
COSMIC LINC01491 COSMIC
Ensembl Genes ENSG00000259572 Ensembl
GTEx ENSG00000259572 GTEx
HGNC ID HGNC:51148 ENTREZGENE
Human Proteome Map LINC01491 Human Proteome Map
NCBI Gene LINC01491 ENTREZGENE
RNAcentral URS000019547E RNACentral