PDE4DIPP1 (PDE4DIP pseudogene 1) - Rat Genome Database

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Gene: PDE4DIPP1 (PDE4DIP pseudogene 1) Homo sapiens
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Symbol: PDE4DIPP1
Name: PDE4DIP pseudogene 1
RGD ID: 8694007
HGNC Page HGNC:50867
Description: INTERACTS WITH benzo[a]pyrene
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: PDE4DIP1; phosphodiesterase 4D interacting protein pseudogene 1
Related Functional Gene: PDE4DIP  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381148,049,302 - 148,094,777 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1148,080,598 - 148,093,883 (+)EnsemblGRCh38hg38GRCh38
GRCh371147,521,553 - 147,567,054 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361146,019,392 - 146,032,780 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map1q21.2NCBI
HuRef1119,878,874 - 119,884,062 (+)NCBIHuRef
CHM1_11149,448,725 - 149,461,906 (+)NCBICHM1_1
T2T-CHM13v2.01146,712,630 - 146,758,115 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:104
Count of miRNA genes:103
Interacting mature miRNAs:104
Transcripts:ENST00000420737
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357381BW57_HBody weight QTL 57 (human)10.0001Body weightfat free mass after exercise training1140630236166630236Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
856 1588 2493 2004 4183 1278 1654 3 445 841 331 1709 5189 4533 26 3284 595 1381 1132 120

Sequence


Ensembl Acc Id: ENST00000420737
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1148,080,598 - 148,093,883 (+)Ensembl
RefSeq Acc Id: NR_146087
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381148,049,302 - 148,094,777 (+)NCBI
T2T-CHM13v2.01146,712,630 - 146,758,115 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC PDE4DIPP1 COSMIC
Ensembl Genes ENSG00000229828 Ensembl
  ENSG00000299329 ENTREZGENE
Ensembl Transcript ENST00000762623 ENTREZGENE
GTEx ENSG00000229828 GTEx
  ENSG00000299329 GTEx
HGNC ID HGNC:50867 ENTREZGENE
Human Proteome Map PDE4DIPP1 Human Proteome Map
NCBI Gene PDE4DIP1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-22 PDE4DIPP1  PDE4DIP pseudogene 1  PDE4DIPP1  phosphodiesterase 4D interacting protein pseudogene 1  Symbol and/or name change 19259463 PROVISIONAL
2015-02-10 PDE4DIPP1  phosphodiesterase 4D interacting protein pseudogene 1  PDE4DIP1    Symbol and/or name change 5135510 APPROVED