DPP9-AS1 (DPP9 antisense RNA 1) - Rat Genome Database

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Gene: DPP9-AS1 (DPP9 antisense RNA 1) Homo sapiens
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Symbol: DPP9-AS1
Name: DPP9 antisense RNA 1
RGD ID: 8661991
HGNC Page HGNC:50706
Description: ASSOCIATED WITH Immunodeficiency 111; INTERACTS WITH cadmium dichloride
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: uncharacterized protein LOC100131094
RGD Orthologs
Pig
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38194,679,282 - 4,685,948 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl194,679,282 - 4,695,017 (+)EnsemblGRCh38hg38GRCh38
GRCh37194,679,294 - 4,685,960 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36194,635,857 - 4,636,960 (+)NCBINCBI36Build 36hg18NCBI36
Celera194,615,968 - 4,622,636 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef194,439,349 - 4,446,016 (+)NCBIHuRef
CHM1_1194,678,979 - 4,685,645 (+)NCBICHM1_1
T2T-CHM13v2.0194,663,455 - 4,670,121 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DPP9-AS1HumanImmunodeficiency 111  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hatipoglu immunodeficiency syndromeClinVarPMID:36112693
DPP9-AS1HumanImmunodeficiency 111  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hatipoglu immunodeficiency syndromeClinVar 


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DPP9-AS1Humancadmium dichloride increases expressionEXP 6480464Cadmium Chloride results in increased expression of DPP9-AS1 mRNACTDPMID:38382870



DPP9-AS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38194,679,282 - 4,685,948 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl194,679,282 - 4,695,017 (+)EnsemblGRCh38hg38GRCh38
GRCh37194,679,294 - 4,685,960 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36194,635,857 - 4,636,960 (+)NCBINCBI36Build 36hg18NCBI36
Celera194,615,968 - 4,622,636 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef194,439,349 - 4,446,016 (+)NCBIHuRef
CHM1_1194,678,979 - 4,685,645 (+)NCBICHM1_1
T2T-CHM13v2.0194,663,455 - 4,670,121 (+)NCBIT2T-CHM13v2.0
DPP9-AS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1274,173,108 - 74,174,312 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1

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Variants in DPP9-AS1
17 total Variants

1 to 10 of 30 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 19p13.3(chr19:3947934-5196676)x3 copy number gain See cases [RCV000134164] Chr19:3947934..5196676 [GRCh38]
Chr19:3947932..5196687 [GRCh37]
Chr19:3898932..5147687 [NCBI36]
Chr19:19p13.3
pathogenic|uncertain significance
GRCh38/hg38 19p13.3(chr19:3338024-4833139)x1 copy number loss See cases [RCV000134482] Chr19:3338024..4833139 [GRCh38]
Chr19:3338022..4833151 [GRCh37]
Chr19:3289022..4784151 [NCBI36]
Chr19:19p13.3
pathogenic
GRCh38/hg38 19p13.3(chr19:3080621-4912622)x3 copy number gain See cases [RCV000137713] Chr19:3080621..4912622 [GRCh38]
Chr19:3080619..4912634 [GRCh37]
Chr19:3031619..4863634 [NCBI36]
Chr19:19p13.3
likely pathogenic
GRCh38/hg38 19p13.3(chr19:259395-6795611)x3 copy number gain See cases [RCV000142627] Chr19:259395..6795611 [GRCh38]
Chr19:259395..6795622 [GRCh37]
Chr19:210395..6746622 [NCBI36]
Chr19:19p13.3
pathogenic
GRCh38/hg38 19p13.3(chr19:3788727-5147354)x1 copy number loss See cases [RCV000143614] Chr19:3788727..5147354 [GRCh38]
Chr19:3788725..5147365 [GRCh37]
Chr19:3739725..5098365 [NCBI36]
Chr19:19p13.3
likely pathogenic
GRCh38/hg38 19p13.3(chr19:4417986-4721866)x1 copy number loss See cases [RCV000051190] Chr19:4417986..4721866 [GRCh38]
Chr19:4417983..4721878 [GRCh37]
Chr19:4368983..4672878 [NCBI36]
Chr19:19p13.3
uncertain significance
GRCh38/hg38 19p13.3-13.2(chr19:265917-8564134)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052876]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052876]|See cases [RCV000052876] Chr19:265917..8564134 [GRCh38]
Chr19:265917..8629018 [GRCh37]
Chr19:216917..8535018 [NCBI36]
Chr19:19p13.3-13.2
pathogenic
GRCh38/hg38 19p13.3(chr19:4008560-4763159)x3 copy number gain See cases [RCV000052880] Chr19:4008560..4763159 [GRCh38]
Chr19:4008558..4763171 [GRCh37]
Chr19:3959558..4714171 [NCBI36]
Chr19:19p13.3
pathogenic
GRCh38/hg38 19p13.3(chr19:233565-4699472)x3 copy number gain See cases [RCV000052575] Chr19:233565..4699472 [GRCh38]
Chr19:233565..4699484 [GRCh37]
Chr19:184565..4650484 [NCBI36]
Chr19:19p13.3
pathogenic
GRCh38/hg38 19p13.3-13.2(chr19:1972245-9648879)x3 copy number gain See cases [RCV000052879] Chr19:1972245..9648879 [GRCh38]
Chr19:1972244..9759555 [GRCh37]
Chr19:1923244..9620555 [NCBI36]
Chr19:19p13.3-13.2
pathogenic
1 to 10 of 30 rows

Predicted Target Of
Summary Value
Count of predictions:284
Count of miRNA genes:270
Interacting mature miRNAs:280
Transcripts:ENST00000381796
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298499UAE1_HUrinary albumin excretion QTL 1 (human)2.730.0009Urinary albumin excretionurine albumin:creatinine ratio (ACR)19116075902Human
1643451SLIPL6_HSerum lipid level QTL 6 (human)2.190.0008Lipid level19116075902Human
1581534BP76_HBlood pressure QTL 76 (human)20.001Blood pressurepulse pressure19116075902Human
1581535BP65_HBlood pressure QTL 65 (human)3.10.001Blood pressurepulse pressure19116075902Human
2314591INSUL4_HInsulin level QTL 4 (human)3.80.000038Insulin levelfasting19116075902Human
1298476BP3_HBlood pressure QTL 3 (human)2.4Blood pressuresystolic19116075902Human




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1204 2419 2788 2241 4929 1683 2273 4 586 1892 428 2263 7135 6390 47 3700 807 1709 1578 170



Ensembl Acc Id: ENST00000381796
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl194,679,282 - 4,685,948 (+)Ensembl
Ensembl Acc Id: ENST00000655857
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl194,692,021 - 4,694,340 (+)Ensembl
Ensembl Acc Id: ENST00000715917
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl194,684,535 - 4,695,017 (+)Ensembl
Ensembl Acc Id: ENST00000715918
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl194,684,575 - 4,694,366 (+)Ensembl
RefSeq Acc Id: NR_164163
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38194,679,282 - 4,685,948 (+)NCBI
T2T-CHM13v2.0194,663,455 - 4,670,121 (+)NCBI
Sequence:
GenBank Protein BAC86437 (Get FASTA)   NCBI Sequence Viewer  



Database
Acc Id
Source(s)
COSMIC DPP9-AS1 COSMIC
Ensembl Genes ENSG00000205790 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000381796 ENTREZGENE
GTEx ENSG00000205790 GTEx
HGNC ID HGNC:50706 ENTREZGENE
Human Proteome Map DPP9-AS1 Human Proteome Map
NCBI Gene DPP9-AS1 ENTREZGENE
RNAcentral URS000018CB8C RNACentral