RPSAP32 (ribosomal protein SA pseudogene 32) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: RPSAP32 (ribosomal protein SA pseudogene 32) Homo sapiens
Analyze
Symbol: RPSAP32
Name: ribosomal protein SA pseudogene 32
RGD ID: 8552174
HGNC Page HGNC:50310
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: RPSA  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383617,789 - 618,389 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3617,789 - 618,314 (-)EnsemblGRCh38hg38GRCh38
GRCh373659,472 - 660,072 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363634,472 - 635,040 (-)NCBINCBI36Build 36hg18NCBI36
Celera3604,780 - 605,348 (-)NCBICelera
Cytogenetic Map3p26.3NCBI
HuRef3605,195 - 605,763 (-)NCBIHuRef
CHM1_13609,777 - 610,345 (-)NCBICHM1_1
T2T-CHM13v2.03609,589 - 610,189 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:221
Count of miRNA genes:177
Interacting mature miRNAs:183
Transcripts:ENST00000432681
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 1 2 3 5 2 5 1 5 2 1 4
Below cutoff 130 119 129 20 33 5 161 98 246 24 138 77 15 34 104

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000432681
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3617,789 - 618,314 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPSAP32 COSMIC
Ensembl Genes ENSG00000238075 Ensembl, ENTREZGENE
GTEx ENSG00000238075 GTEx
HGNC ID HGNC:50310 ENTREZGENE
Human Proteome Map RPSAP32 Human Proteome Map
NCBI Gene RPSAP32 ENTREZGENE