MIR6125 (microRNA 6125) - Rat Genome Database

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Gene: MIR6125 (microRNA 6125) Homo sapiens
Analyze
Symbol: MIR6125
Name: microRNA 6125
RGD ID: 8551217
HGNC Page HGNC:49931
Description: Located in extracellular exosome.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: hsa-mir-6125; mir-6125
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381262,260,359 - 62,260,454 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1262,260,359 - 62,260,454 (+)EnsemblGRCh38hg38GRCh38
GRCh371262,654,140 - 62,654,235 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12q14.1NCBI
HuRef1259,705,076 - 59,705,171 (+)NCBIHuRef
CHM1_11262,622,050 - 62,622,145 (+)NCBICHM1_1
T2T-CHM13v2.01262,239,173 - 62,239,268 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:16381832   PMID:21037258   PMID:22345437   PMID:31926946   PMID:34011306  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12q14.1-14.3(chr12:60907151-66568077)x1 copy number loss See cases [RCV000138985] Chr12:60907151..66568077 [GRCh38]
Chr12:61300932..66961857 [GRCh37]
Chr12:59587199..65248124 [NCBI36]
Chr12:12q14.1-14.3		 pathogenic
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33		 pathogenic
GRCh38/hg38 12q14.1(chr12:61201517-62266814)x3 copy number gain See cases [RCV000143531] Chr12:61201517..62266814 [GRCh38]
Chr12:61595298..62660595 [GRCh37]
Chr12:59881565..60946862 [NCBI36]
Chr12:12q14.1		 uncertain significance
GRCh38/hg38 12q14.1-14.2(chr12:60303553-63356583)x3 copy number gain See cases [RCV000051959] Chr12:60303553..63356583 [GRCh38]
Chr12:60697334..63750363 [GRCh37]
Chr12:58983601..62036630 [NCBI36]
Chr12:12q14.1-14.2		 uncertain significance
GRCh38/hg38 12q13.3-14.2(chr12:57013355-63042498)x1 copy number loss See cases [RCV000052813] Chr12:57013355..63042498 [GRCh38]
Chr12:57407139..63436278 [GRCh37]
Chr12:55693406..61722545 [NCBI36]
Chr12:12q13.3-14.2		 pathogenic
GRCh38/hg38 12q14.1(chr12:60907169-62595121)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053683]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053683]|See cases [RCV000053683] Chr12:60907169..62595121 [GRCh38]
Chr12:61300950..62988901 [GRCh37]
Chr12:59587217..61275168 [NCBI36]
Chr12:12q14.1		 pathogenic
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:11193
Count of gene targets:5408
Count of transcripts:9808
Interacting mature miRNAs:hsa-miR-6125
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENST00000618986
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1262,260,359 - 62,260,454 (+)Ensembl
RefSeq Acc Id: NR_106740
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381262,260,359 - 62,260,454 (+)NCBI
HuRef1259,705,076 - 59,705,171 (+)NCBI
CHM1_11262,622,050 - 62,622,145 (+)NCBI
T2T-CHM13v2.01262,239,173 - 62,239,268 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC MIR6125 COSMIC
Ensembl Genes ENSG00000284360 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000618986 ENTREZGENE
GTEx ENSG00000284360 GTEx
HGNC ID HGNC:49931 ENTREZGENE
Human Proteome Map MIR6125 Human Proteome Map
miRBase MI0021259 ENTREZGENE
NCBI Gene MIR6125 ENTREZGENE
RNAcentral URS000075E538 RNACentral
  URS000075F0F0 RNACentral