NDFIP1P1 (Nedd4 family interacting protein 1 pseudogene 1) - Rat Genome Database

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Gene: NDFIP1P1 (Nedd4 family interacting protein 1 pseudogene 1) Homo sapiens
Analyze
Symbol: NDFIP1P1
Name: Nedd4 family interacting protein 1 pseudogene 1
RGD ID: 8549095
HGNC Page HGNC:49866
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: NDFIP1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381218,358,433 - 18,359,144 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1218,358,443 - 18,358,967 (-)EnsemblGRCh38hg38GRCh38
GRCh371218,511,367 - 18,512,078 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1223,656,569 - 23,657,093 (-)NCBICelera
Cytogenetic Map12p12.3NCBI
HuRef1218,279,479 - 18,280,003 (-)NCBIHuRef
CHM1_11218,476,604 - 18,477,128 (-)NCBICHM1_1
T2T-CHM13v2.01218,234,384 - 18,235,095 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:95
Count of miRNA genes:87
Interacting mature miRNAs:88
Transcripts:ENST00000543144
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 108 1 19 19 5 19 365 3 10 4 171
Below cutoff 228 33 157 130 60 119 754 53 72 67 190 54 13 27 422

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000543144
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1218,358,443 - 18,358,967 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC NDFIP1P1 COSMIC
Ensembl Genes ENSG00000255892 Ensembl
GTEx ENSG00000255892 GTEx
HGNC ID HGNC:49866 ENTREZGENE
Human Proteome Map NDFIP1P1 Human Proteome Map
NCBI Gene NDFIP1P1 ENTREZGENE