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Gene: LOC102550328 (uncharacterized LOC102550328) Rattus norvegicus

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Symbol:

LOC102550328

Name:

uncharacterized LOC102550328

RGD ID:

7692592

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	47,150,260 - 47,159,897 (+)	NCBI		GRCr8
mRatBN7.2	20	45,567,987 - 45,580,165 (+)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	20	46,942,789 - 46,948,942 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	20	48,602,709 - 48,626,997 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	20	54,383,575 - 54,389,270 (-)	NCBI		Celera
Cytogenetic Map	20	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
2303587	Bw93	Body weight QTL 93	13		body mass (VT:0001259)	body weight (CMO:0000012)	20	26689362	56021148	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
1331747	Hrtrt16	Heart rate QTL 16	3.163		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	20	26792353	56021148	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	12243242	49189476	Rat
2303626	Vencon10	Ventilatory control QTL 10		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	20	20745585	56021148	Rat
2303578	Gluco50	Glucose level QTL 50	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	20	26689362	56021148	Rat
1598869	Memor6	Memory QTL 6	3.1		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	20	26689362	56021148	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
2300188	Bmd68	Bone mineral density QTL 68	6.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	20	26689362	56021148	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_005497547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_597446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_597447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_599508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_599509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_599510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_005497547

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	47,150,260 - 47,159,897 (+)	NCBI
mRatBN7.2	20	45,567,987 - 45,580,165 (+)	NCBI

RefSeq Acc Id:

XR_005497548

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	47,150,260 - 47,159,897 (+)	NCBI
mRatBN7.2	20	45,567,987 - 45,580,165 (+)	NCBI

RefSeq Acc Id:

XR_597446

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	47,150,260 - 47,159,897 (+)	NCBI
mRatBN7.2	20	45,567,987 - 45,580,165 (+)	NCBI
Rnor_6.0	20	46,942,789 - 46,948,942 (+)	NCBI

Sequence:

show sequence

GTGCGCCTGTGTATGTGTATGATATAGTTTTTAGTATATGTACTTGTTAGTTTGTATGCACACA
TGCATGAGGATGCTGGTGCACATATGTTGCACATGCATGTGGAGCTCCACTTTGCCCGTCCGTT
CTCCACAGTTCTCCAGTGTTAATATTTGAGACAGCGTCTCTGGTTGAACCTGTAGGCCAATGAC
TGGGCTAGTCCAGCTGACTGACTAAAGAGCTTCAAGAACCCAAGTGTCTCTGCTACTCTCTCTC
CCTGCGCTGGGGTTACAGGCAGGAACCCCTCCCTGTGCTGAGCCCTTCACCTGGGTTCTAGGGA
TTGGAACTCAACTCCTCGTGCTTTCAGGGTAGGTACTTCGCCGGCTGAGCCATCTCCCCAGCCG
GTACATCTGATTTTAAGTGACCTTTATCAGGATCCAGCTTCTGCCTGTTCTACCAAAGCTGTCC
TCAGACAGGCTACACCACTCCAAGTTCACAGCCAGCCGAAATGAGTATCTTTGTTCTAGGACAT
CTGAGGGTGGCTCTGCTGGCTCTGGGTGCTCCCCTGCCTACTCCTGAGTTCACTGCCTTGGTGA
ATGTCACCTGCTGTAGCTCAGGTTGTCGATTCCCGAGTCAAGAGTGGATGTAGCCCCCTGAGTG
GTCTGTGACCCCCAGACGGGAAGGCAGGGCGCGCTTACCAGTTAATGAACGCTGAACAGCTGAA
AGGGGAAATGTCCACTTTTCTGGTCAAACCCAGGGTCTAATTCCACACACATTAGAAGTCCTTA
GAAGACCACTGTCTTCCCCGGCTGCTCTTGCTCCTGCCATCTAGCTGTCTTGGCAAGGGTAGGA
GCTTGGGAGAAGGAGGTAGGAGCCATTGTTCCCCCAGGTGCCCTTTGTTCTTGTTGCCACAGGA
TCGAGCATCCTGACCCCTCTGTGTGCCACTGTGATTCTGGAAAAGACACTCTTCCACTCGGAGT
CACAGTTTCCTCTGCTGCAGATACGGTTCGTGATGTCCATGCAACCTCTCTCAGGAGACAGGAA
GTGGGTAGTGGGTGGCAGGACCAGAGACTCGTGTCTCCTCTTTTTTTTCTTTTTTTTTTTTTAA
AGAGGTCCTTTATTGAAAGGGGGGAGGAAGCCAGGAAGAGAACGCTTGGGTCTCCTCCTTAAGG
CTGGGGCAGCTCTGAAGAAGCCACACAGAGTAAGGTTTTGTTTGTTTTGAACACTTTCGGTGCT
GGCCCAGAACGCTTAAAGGAAATGCTTTAAACGTGTTGGCAATCTGTGCTCTGAGTGAGACCAC
GGCCTCTGAGCCCAGACAGATCAGTCCAAGCTCTGGCCCTGCCCCAAGTGTTTGTGTGTTTAAC
TTCTCAAGGGTTTCCACTGAGGGGAACAAAAGCCCAGAAGTTTCCCCGAAGTCCTTTGGCTTAA
TCCTCCCAAGAGTCATTGAAGCCTCTCAAGATTGATCCAGAAAGTGGAGGACACTTCAAGACTC
TGCTTTTCATATTTGTCTGTTCCTCTTCAACAAACCCACTTGAGGTTTTTGTTGTTGTTTTTTT
TTTTTTTTCTTTTTATGCCCCAGTGACAACATAACACTGAAGTTCAAGAATTATGTCTAGGGTC
ACAGTGGCAGGAAGTGGCTGAACAGGGAGGCATCTTTCAAGAATCTTCTCTCCATGCACAGAGA
GAAAGAAAGAGCTAAGACTGCAACGGGCTCTCAGGCTGAGAAACCGGAAAGAACGGGTTTTGAC
AGCATTCGACAGGAAGATGGCAAGGTTTAAGCAAAGGGTGCAAACCACAGGCTGGAAGCTCCAG
ATGCCTTGATGACGTCACGCCCATGGAGCCGGCCCTGTGCCTGACTTGATGTTCAGCTGGATTG
AAAGTTGGAGCACAAAGGAACAGACAGTTTTAAGGGAACCAGCAGATAAATTTGTATTTCTGGT
TGGGTAAGAAGGATGAAGACTTAACAAAAATCAAACTACTGGTTTTTGTGGATGAAAGTCCCTG
GAAAGGAGATAGATGTACCCGCCTGACCACAGCAGGGATCTCAGTATCTGAGGTTCTAATGTTC
AGTATCTAATGTTCCAGGTCCTGAGCCAAATTACTTTGGGCCAATCATTAGCCTCCTTAACAGC
CACCGATCGCCTTCTGTATGCGCCCTAACAGCTCTGTGGCCCTTAGCTTCCTGCTCTCTCAGAA
CACGATGTTTGTAAAACAAACAATCACAAAACAAAACGAAACAAAACGAAACAGAGAACTCTGT
TCCCAAGCCATGGCCATCCCTACTGGCTCCAGAACTCTGATCCCCTTCGAGAAACGGAACTTCG
TGAACGCGTGTGGCGAGAGCATTAAATAGACACCAGCTCTCCTGTGTTCTGCACTCACTTCCCA
GGGAAGCCATACACCTAATAAACTGCCCAGCCAGAGCTGGCTTGCACTGCTGATAGCCTCAGCA
GGCACTGACCTTGGCACCGTGACAAGGGCAACATTTCCAAGTGGATGAGCGCCTCCTGAACAAA
GTGTCCAATGTACCAGGAATAAACAGGCCTTTCATCAACCGAGCCTGCGTGTTTTCTGGTTCCA
ACAGCCTTCCCCACTGCCGGGGTCAGAAAGCAGGGACATCAACCAGCAGGGCCTCTTGGACAAC
CTGCTAGTCTTGCTCATTCCTCCCAGAGGATTCTGGGACTGAATAGACTTGCAGGCCTCTGCCA
TCACCTGTCATGGCTGCAGTACAACTATTTTAAACTTACGTTTGACCAGCTTAGGAATGAACAA
GACTCAGACTGTGGTTATTTTATTTGACTTTGACAATTATTGGGGGGTGACCCCTAATCTACTT
TTCTAACTGCTGGCCTGGCTACCTCCCCAGCGGTGTACCCCAAATGCTTGCCGTTTCTCCTGGC
CGTGTGCTCACGGTCCATCTCCTCTCATGGCGGCTTCCTCTCTCCTCCTCATTTTCTCCTCCCC
TCCACGCTCAACCAGGTAACTCAAAAACCCACCTCCCTCCAACCCCTACCCCCAGAAATTGTCC
GTAGTCATTTTTATTTAACCAATAGTTTTAAATTAAGGAACAGGGTTTGCACAACAACCGCTGG
TAAATTTGAGAATTGCCTCGTAGGCTTAGACGTACGAATTTAGTATCCAATACATAGCGGCTCA
CCAAACTTCAACGCGAGGTTCCATGATTTCCCTTCTCCATTTCTGCAAGAGTAGAACCGGAAAA
GTGCGTTCCTTTACGCCTTGGTAAGATCTGAGCAGGGGCATTAGCTCCCCCTGTGGTGCAAAAG
GGGAGTCTTGGGGCCACATTCGCAAAACTCTGTACAGCAGCCCCAAATAGGACATCACATCGTC
AAGCACTGGCAGGGCCAACTTTTGAAAGGGACAGGTCACTAAGTCAGCCCCAAGGAGAGCATGC
ACAGGCTTAGAGGATAAGCTCCTGGA

hide sequence

RefSeq Acc Id:

XR_597447

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	47,150,260 - 47,159,897 (+)	NCBI
mRatBN7.2	20	45,567,987 - 45,580,165 (+)	NCBI
Rnor_6.0	20	46,942,789 - 46,948,942 (+)	NCBI

Sequence:

show sequence

GTGCGCCTGTGTATGTGTATGATATAGTTTTTAGTATATGTACTTGTTAGTTTGTATGCACACA
TGCATGAGGATGCTGGTGCACATATGTTGCACATGCATGTGGAGCTCCACTTTGCCCGTCCGTT
CTCCACAGTTCTCCAGTGTTAATATTTGAGACAGCGTCTCTGGTTGAACCTGTAGGCCAATGAC
TGGGCTAGTCCAGCTGACTGACTAAAGAGCTTCAAGAACCCAAGTGTCTCTGCTACTCTCTCTC
CCTGCGCTGGGGTTACAGGCAGGAACCCCTCCCTGTGCTGAGCCCTTCACCTGGGTTCTAGGGA
TTGGAACTCAACTCCTCGTGCTTTCAGGGTAGGTACTTCGCCGGCTGAGCCATCTCCCCAGCCG
GTACATCTGATTTTAAGTGACCTTTATCAGGATCCAGCTTCTGCCTGTTCTACCAAAGCTGTCC
TCAGACAGGCTACACCACTCCAAGTTCACAGCCAGCCGAAATGAGTATCTTTGTTCTAGGACAT
CTGAGGGTGGCTCTGCTGGCTCTGGGTGCTCCCCTGCCTACTCCTGAGTTCACTGCCTTGGTGA
ATGTCACCTGCTGTAGCTCAGGTTGTCGATTCCCGAGTCAAGAGTGGATGTAGCCCCCTGAGTG
GTCTGTGACCCCCAGACGGGAAGGCAGGGCGCGCTTACCAGTTAATGAACGCTGAACAGCTGAA
AGGGGAAATGTCCACTTTTCTGGTCAAACCCAGGGTCTAATTCCACACACATTAGAAGTCCTTA
GAAGACCACTGTCTTCCCCGGCTGCTCTTGCTCCTGCCATCTAGCTGTCTTGGCAAGGGTAGGA
GCTTGGGAGAAGGAGGTAGGAGCCATTGTTCCCCCAGGTGCCCTTTGTTCTTGTTGCCACAGGA
TCGAGCATCCTGACCCCTCTGTGTGCCACTGTGATTCTGGAAAAGACACTCTTCCACTCGGAGT
CACAGTTTCCTCTGCTGCAGATACGGTTCGTGATGTCCATGCAACCTCTCTCAGGAGACAGGAA
GTGGGTAGTGGGTGGCAGGACCAGAGACTCGTGTCTCCTCTTTTTTTTCTTTTTTTTTTTTTAA
AGAGGTCCTTTATTGAAAGGGGGGAGGAAGCCAGGAAGAGAACGCTTGGGTCTCCTCCTTAAGG
CTGGGGCAGCTCTGAAGAAGCCACACAGAGTAAGGTTTTGTTTGTTTTGAACACTTTCGGTGCT
GGCCCAGAACGCTTAAAGGAAATGCTTTAAACGTGTTGGCAATCTGTGCTCTGAGTGAGACCAC
GGCCTCTGAGCCCAGACAGATCAGTCCAAGCTCTGGCCCTGCCCCAAGTGTTTGTGTGTTTAAC
TTCTCAAGGGTTTCCACTGAGGGGAACAAAAGCCCAGAAGTTTCCCCGAAGTCCTTTGGCTTAA
TCCTCCCAAGAGTCATTGAAGCCTCTCAAGATTGATCCAGAAAGTGGAGGACACTTCAAGACTC
TGCTTTTCATATTTGTCTGTTCCTCTTCAACAAACCCACTTGAGGTTTTTGTTGTTGTTTTTTT
TTTTTTTTCTTTTTATGCCCCAGTGACAACATAACACTGAAGTTCAAGAATTATGTCTAGGGTC
ACAGTGGCAGGAAGTGGCTGAACAGGGAGGCATCTTTCAAGAATCTTCTCTCCATGCACAGAGA
GAAAGAAAGAGCTAAGACTGCAACGGGCTCTCAGGCTGAGAAACCGGAAAGAACGGGTTTTGAC
AGCATTCGACAGGAAGATGGCAAGGTTTAAGCAAAGGGTGCAAACCACAGGCTGGAAGCTCCAG
ATGCCTTGATGACGTCACGCCCATGGAGCCGGCCCTGTGCCTGACTTGATGTTCAGCTGGATTG
AAAGTTGGAGCACAAAGGAACAGACAGTTTTAAGGGAACCAGCAGATAAATTTGTATTTCTGGT
TGGGTAAGAAGGATGAAGACTTAACAAAAATCAAACTACTGGTTTTTGTGGATGAAAGTCCCTG
GAAAGGAGATAGATGTACCCGCCTGACCACAGCAGGGATCTCAGTATCTGAGGTTCTAATGTTC
AGTATCTAATGTTCCAGGTCCTGAGCCAAATTACTTTGGGCCAATCATTAGCCTCCTTAACAGC
CACCGATCGCCTTCTGTATGCGCCCTAACAGCTCTGTGGCCCTTAGAAACGGAACTTCGTGAAC
GCGTGTGGCGAGAGCATTAAATAGACACCAGCTCTCCTGTGTTCTGCACTCACTTCCCAGGGAA
GCCATACACCTAATAAACTGCCCAGCCAGAGCTGGCTTGCACTGCTGATAGCCTCAGCAGGCAC
TGACCTTGGCACCGTGACAAGGGCAACATTTCCAAGTGGATGAGCGCCTCCTGAACAAAGTGTC
CAATGTACCAGGAATAAACAGGCCTTTCATCAACCGAGCCTGCGTGTTTTCTGGTTCCAACAGC
CTTCCCCACTGCCGGGGTCAGAAAGCAGGGACATCAACCAGCAGGGCCTCTTGGACAACCTGCT
AGTCTTGCTCATTCCTCCCAGAGGATTCTGGGACTGAATAGACTTGCAGGCCTCTGCCATCACC
TGTCATGGCTGCAGTACAACTATTTTAAACTTACGTTTGACCAGCTTAGGAATGAACAAGACTC
AGACTGTGGTTATTTTATTTGACTTTGACAATTATTGGGGGGTGACCCCTAATCTACTTTTCTA
ACTGCTGGCCTGGCTACCTCCCCAGCGGTGTACCCCAAATGCTTGCCGTTTCTCCTGGCCGTGT
GCTCACGGTCCATCTCCTCTCATGGCGGCTTCCTCTCTCCTCCTCATTTTCTCCTCCCCTCCAC
GCTCAACCAGGTAACTCAAAAACCCACCTCCCTCCAACCCCTACCCCCAGAAATTGTCCGTAGT
CATTTTTATTTAACCAATAGTTTTAAATTAAGGAACAGGGTTTGCACAACAACCGCTGGTAAAT
TTGAGAATTGCCTCGTAGGCTTAGACGTACGAATTTAGTATCCAATACATAGCGGCTCACCAAA
CTTCAACGCGAGGTTCCATGATTTCCCTTCTCCATTTCTGCAAGAGTAGAACCGGAAAAGTGCG
TTCCTTTACGCCTTGGTAAGATCTGAGCAGGGGCATTAGCTCCCCCTGTGGTGCAAAAGGGGAG
TCTTGGGGCCACATTCGCAAAACTCTGTACAGCAGCCCCAAATAGGACATCACATCGTCAAGCA
CTGGCAGGGCCAACTTTTGAAAGGGACAGGTCACTAAGTCAGCCCCAAGGAGAGCATGCACAGG
CTTAGAGGATAAGCTCCTGGA

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-3368	BioCyc
NCBI Gene	LOC102550328	ENTREZGENE
PhenoGen	LOC102550328	PhenoGen
RNAcentral	URS0000CCE26F	RNACentral
	URS0000CCEDC2	RNACentral
	URS0000CCF514	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-12-18	LOC102550328	uncharacterized LOC102550328			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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