LOC102554253 (uncharacterized LOC102554253) - Rat Genome Database

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Gene: LOC102554253 (uncharacterized LOC102554253) Rattus norvegicus
Analyze
Symbol: LOC102554253
Name: uncharacterized LOC102554253
RGD ID: 7526315
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8410,854,686 - 10,859,277 (-)NCBIGRCr8
mRatBN7.2410,120,883 - 10,125,470 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.046,669,295 - 6,674,887 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.046,686,396 - 6,691,956 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera4195,511 - 201,101 (+)NCBICelera
Cytogenetic Map4q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4128392287Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4145429897Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4132668025Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4132668025Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4128392287Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4132668025Rat
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4128392287Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4140471598Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4842855130449094Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4134142783Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4588999950889999Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4134142783Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4133538816Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)4163900697Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4589457557613242Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4131106810Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4132668025Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41075870140490708Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XR_005504107
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8410,854,686 - 10,859,248 (-)NCBI
mRatBN7.2410,120,883 - 10,125,462 (-)NCBI
RefSeq Acc Id: XR_010065730
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8410,854,686 - 10,859,257 (-)NCBI
RefSeq Acc Id: XR_010065731
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8410,854,686 - 10,859,277 (-)NCBI
RefSeq Acc Id: XR_010065732
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8410,854,686 - 10,859,277 (-)NCBI
RefSeq Acc Id: XR_010065733
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8410,854,686 - 10,859,270 (-)NCBI
RefSeq Acc Id: XR_010065734
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8410,854,686 - 10,859,259 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-46069 BioCyc
NCBI Gene LOC102554253 ENTREZGENE
PhenoGen LOC102554253 PhenoGen
RNAcentral URS0000CD08D4 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-17 LOC102554253  uncharacterized LOC102554253      Symbol and Name status set to provisional 70820 PROVISIONAL