BMS1P16 (BMS1 pseudogene 16) - Rat Genome Database

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Gene: BMS1P16 (BMS1 pseudogene 16) Homo sapiens
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Symbol: BMS1P16
Name: BMS1 pseudogene 16
RGD ID: 7380119
HGNC Page HGNC:49161
Description:
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: BMS1, ribosome biogenesis factor pseudogene 16
Related Functional Gene: BMS1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381521,160,305 - 21,167,357 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1521,160,305 - 21,167,357 (+)EnsemblGRCh38hg38GRCh38
GRCh371521,365,634 - 21,372,686 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361519,624,879 - 19,635,323 (+)NCBINCBI36Build 36hg18NCBI36
Celera225,677,423 - 5,678,127 (+)NCBICelera
Cytogenetic Map15q11.2NCBI
CHM1_11521,365,677 - 21,372,775 (+)NCBICHM1_1
T2T-CHM13v2.01519,484,054 - 19,491,106 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:11779832  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:68
Interacting mature miRNAs:68
Transcripts:ENST00000556075
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
320 643 612 452 1467 516 887 4 186 479 140 646 1863 1523 38 1111 366 871 667 58

Sequence


Ensembl Acc Id: ENST00000556075
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1521,160,305 - 21,167,357 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC BMS1P16 COSMIC
Ensembl Genes ENSG00000258684 Ensembl, ENTREZGENE
GTEx ENSG00000258684 GTEx
HGNC ID HGNC:49161 ENTREZGENE
Human Proteome Map BMS1P16 Human Proteome Map
NCBI Gene BMS1P16 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-22 BMS1P16  BMS1 pseudogene 16    BMS1, ribosome biogenesis factor pseudogene 16  Symbol and/or name change 5135510 APPROVED
2015-12-01 BMS1P16  BMS1, ribosome biogenesis factor pseudogene 16    BMS1 ribosome biogenesis factor pseudogene 16  Symbol and/or name change 5135510 APPROVED
2015-04-08 BMS1P16  BMS1 pseudogene 16    BMS1 ribosome biogenesis factor pseudogene 16  Symbol and/or name change 5135510 APPROVED