TPT1P10 (TPT1 pseudogene 10) - Rat Genome Database

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Gene: TPT1P10 (TPT1 pseudogene 10) Homo sapiens
Analyze
Symbol: TPT1P10
Name: TPT1 pseudogene 10
RGD ID: 7375266
HGNC Page HGNC:49301
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: tumor protein, translationally-controlled 1 pseudogene 10
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381058,212,325 - 58,213,456 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1058,212,541 - 58,213,036 (-)EnsemblGRCh38hg38GRCh38
GRCh371059,972,294 - 59,972,797 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map10q21.1NCBI
HuRef1053,961,165 - 53,961,668 (-)NCBIHuRef
CHM1_11060,254,071 - 60,254,574 (-)NCBICHM1_1
T2T-CHM13v2.01059,066,023 - 59,067,564 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:95
Count of miRNA genes:94
Interacting mature miRNAs:95
Transcripts:ENST00000312966
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 4 1
Low 72 144 48 16 394 12 402 53 140 34 72 116 7 91 185 3
Below cutoff 986 1162 672 226 676 130 2118 815 937 112 560 725 102 663 1303 1

Sequence

Nucleotide Sequences
GenBank Nucleotide AC016396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000312966
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1058,212,541 - 58,213,036 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TPT1P10 COSMIC
Ensembl Genes ENSG00000180221 Ensembl
GTEx ENSG00000180221 GTEx
HGNC ID HGNC:49301 ENTREZGENE
Human Proteome Map TPT1P10 Human Proteome Map
NCBI Gene TPT1P10 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-10-04 TPT1P10  TPT1 pseudogene 10  TPT1P10  tumor protein, translationally-controlled 1 pseudogene 10  Symbol and/or name change 19259463 PROVISIONAL