RBM22P12 (RNA binding motif protein 22 pseudogene 12) - Rat Genome Database

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Gene: RBM22P12 (RNA binding motif protein 22 pseudogene 12) Homo sapiens
Analyze
Symbol: RBM22P12
Name: RNA binding motif protein 22 pseudogene 12
RGD ID: 7368626
HGNC Page HGNC:49207
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: RBM22  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381631,680,771 - 31,682,012 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1631,680,847 - 31,682,101 (+)EnsemblGRCh38hg38GRCh38
GRCh371631,692,092 - 31,693,333 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361631,599,599 - 31,619,895 (+)NCBINCBI36Build 36hg18NCBI36
Celera1628,615,473 - 28,616,714 (-)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1629,252,564 - 29,253,805 (+)NCBIHuRef
CHM1_11633,010,749 - 33,011,990 (+)NCBICHM1_1
T2T-CHM13v2.01632,068,168 - 32,069,409 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:104
Interacting mature miRNAs:105
Transcripts:ENST00000567098
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 1 10 2 1
Below cutoff 93 115 56 20 61 10 176 85 127 70 254 58 10 43 114

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000567098
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1631,680,847 - 31,682,101 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RBM22P12 COSMIC
Ensembl Genes ENSG00000260631 Ensembl, ENTREZGENE
GTEx ENSG00000260631 GTEx
HGNC ID HGNC:49207 ENTREZGENE
Human Proteome Map RBM22P12 Human Proteome Map
NCBI Gene RBM22P12 ENTREZGENE