Kcns3 (potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3) - Rat Genome Database

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Gene: Kcns3 (potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3) Mus musculus
Analyze
Symbol: Kcns3
Name: potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3
RGD ID: 731287
MGI Page MGI
Description: Predicted to enable potassium channel regulator activity. Predicted to be involved in action potential and potassium ion transmembrane transport. Predicted to be located in Golgi apparatus; cytosol; and plasma membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in membrane. Is expressed in dentate gyrus subgranular zone and otocyst. Orthologous to human KCNS3 (potassium voltage-gated channel modifier subfamily S member 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: D12Ertd137; D12Ertd137e; delayed-rectifier potassium channel regulatory subunit KCNS3; delayed-rectifier potassium channel subunit Kv9.3; DNA segment, Chr 12, ERATO Doi 137, expressed; potassium voltage-gated channel subfamily S member 3; voltage-gated potassium channel subunit Kv9.3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391211,140,738 - 11,201,186 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1211,140,203 - 11,201,057 (-)EnsemblGRCm39 Ensembl
GRCm381211,090,202 - 11,151,168 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1211,090,202 - 11,151,056 (-)EnsemblGRCm38mm10GRCm38
MGSCv371211,097,008 - 11,157,648 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361211,116,545 - 11,176,716 (-)NCBIMGSCv36mm8
Celera1211,445,677 - 11,499,189 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map125.58NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-Zearalanol  (ISO)
amitriptyline  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
butanal  (ISO)
cadmium sulfate  (ISO)
calcitriol  (ISO)
choline  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (EXP)
dorsomorphin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
fenvalerate  (ISO)
folic acid  (EXP)
fonofos  (ISO)
fulvestrant  (ISO)
furan  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glyphosate  (EXP)
ketamine  (ISO)
L-methionine  (EXP)
lead(II) chloride  (ISO)
lipopolysaccharide  (ISO)
Muraglitazar  (ISO)
oxaliplatin  (ISO)
paracetamol  (ISO)
parathion  (ISO)
pentanal  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
pravastatin  (EXP,ISO)
progesterone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
Soman  (ISO)
temozolomide  (ISO)
terbufos  (ISO)
Tesaglitazar  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
troglitazone  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11420610   PMID:12477932   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16985003  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:24154525   PMID:30078709   PMID:33795231   PMID:33940180   PMID:38355793  


Genomics

Comparative Map Data
Kcns3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391211,140,738 - 11,201,186 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1211,140,203 - 11,201,057 (-)EnsemblGRCm39 Ensembl
GRCm381211,090,202 - 11,151,168 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1211,090,202 - 11,151,056 (-)EnsemblGRCm38mm10GRCm38
MGSCv371211,097,008 - 11,157,648 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361211,116,545 - 11,176,716 (-)NCBIMGSCv36mm8
Celera1211,445,677 - 11,499,189 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map125.58NCBI
KCNS3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38217,877,847 - 17,932,958 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl217,877,847 - 18,361,616 (+)EnsemblGRCh38hg38GRCh38
GRCh37218,059,114 - 18,114,225 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36217,923,426 - 17,977,706 (+)NCBINCBI36Build 36hg18NCBI36
Build 34217,981,572 - 18,035,852NCBI
Celera217,940,636 - 17,994,899 (+)NCBICelera
Cytogenetic Map2p24.2NCBI
HuRef217,834,922 - 17,889,158 (+)NCBIHuRef
CHM1_1217,989,211 - 18,043,592 (+)NCBICHM1_1
T2T-CHM13v2.0217,909,623 - 17,964,710 (+)NCBIT2T-CHM13v2.0
Kcns3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8639,527,410 - 39,584,105 (-)NCBIGRCr8
mRatBN7.2633,808,314 - 33,865,018 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl633,808,216 - 33,865,125 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx634,107,897 - 34,164,483 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0634,423,837 - 34,480,424 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0633,893,342 - 33,951,208 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0636,764,040 - 36,819,810 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl636,764,044 - 36,819,821 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0646,515,725 - 46,571,008 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4634,534,529 - 34,593,882 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1634,537,483 - 34,596,835 (-)NCBI
Celera633,214,539 - 33,271,856 (-)NCBICelera
Cytogenetic Map6q15NCBI
Kcns3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955469675,032 - 727,666 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955469675,032 - 727,666 (+)NCBIChiLan1.0ChiLan1.0
KCNS3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212108,592,973 - 108,652,322 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A108,596,939 - 108,656,288 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A17,858,153 - 17,913,221 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A17,985,982 - 18,040,875 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A18,038,922 - 18,040,397 (+)Ensemblpanpan1.1panPan2
KCNS3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11713,297,242 - 13,338,319 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1713,336,374 - 13,337,849 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1713,249,151 - 13,290,532 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01713,433,935 - 13,478,839 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1713,433,984 - 13,478,836 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11713,292,424 - 13,333,593 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01713,303,284 - 13,344,480 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01713,329,484 - 13,370,661 (+)NCBIUU_Cfam_GSD_1.0
Kcns3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629257,744,965 - 57,787,563 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649313,052,037 - 13,094,609 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649313,052,037 - 13,094,786 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNS3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3119,951,106 - 119,989,366 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13119,951,110 - 119,989,541 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
KCNS3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11489,740,867 - 89,791,645 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1489,742,363 - 89,743,838 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604522,436,654 - 22,484,826 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcns3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624738841,459 - 863,366 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624738834,779 - 863,400 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kcns3
2053 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:640
Count of miRNA genes:236
Interacting mature miRNAs:289
Transcripts:ENSMUST00000055673, ENSMUST00000164495
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884410Bzwq15_mbi-zygomatic width QTL 15, 16 week (mouse)12365000029749999Mouse
1301393Dyscalc3_mdystrophic cardiac calcinosis 3 (mouse)Not determined12122418579Mouse
12910983Pifs1_mpeptide-induced fatal syndrome 1 (mouse)12130433078Mouse
4141436Chldq7_mcholesterol and HDL QTL 7 (mouse)Not determined12127920733Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
1301655Bmd12_mbone mineral density 12 (mouse)Not determined12124662697Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
1301143Skull17_mskull morphology 17 (mouse)Not determined12122418579Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
11039525Tbbr2_mTrypanosoma brucei brucei response 2 (mouse)12122418579Mouse
4141296Femwf9_mfemur work to failure 9 (mouse)Not determined127920733Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
12792982Fbmd4_mfemoral bone mineral density 4, females only (mouse)121004319424365136Mouse
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132758756Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
1357519Vtbt12_mvertebral trabecular bone trait 12 (mouse)Not determined12124662697Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
10402496Lmr22_mleishmaniasis resistance 22 (mouse)Not determined12122418579Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse

Markers in Region
BB386162  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381211,090,775 - 11,090,876UniSTSGRCm38
MGSCv371211,097,581 - 11,097,682UniSTSGRCm37
Celera1211,446,250 - 11,446,351UniSTS
Cytogenetic Map12A1.1UniSTS
Whitehead/MRC_RH12139.93UniSTS
UniSTS:236805  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381211,092,288 - 11,092,525UniSTSGRCm38
MGSCv371211,099,094 - 11,099,331UniSTSGRCm37
Celera1211,447,763 - 11,448,000UniSTS
Cytogenetic Map12A1.1UniSTS
D12Ertd137e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381211,091,040 - 11,091,241UniSTSGRCm38
MGSCv371211,097,846 - 11,098,047UniSTSGRCm37
Celera1211,446,515 - 11,446,716UniSTS
Cytogenetic Map12A1.1UniSTS
cM Map122.5UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001168564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_173417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC120406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000055673   ⟹   ENSMUSP00000060706
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1211,140,203 - 11,200,374 (-)Ensembl
GRCm38.p6 Ensembl1211,090,202 - 11,150,373 (-)Ensembl
Ensembl Acc Id: ENSMUST00000164495   ⟹   ENSMUSP00000129412
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1211,140,741 - 11,200,843 (-)Ensembl
GRCm38.p6 Ensembl1211,090,740 - 11,150,842 (-)Ensembl
Ensembl Acc Id: ENSMUST00000217974   ⟹   ENSMUSP00000152026
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1211,140,738 - 11,201,057 (-)Ensembl
GRCm38.p6 Ensembl1211,090,737 - 11,151,056 (-)Ensembl
RefSeq Acc Id: NM_001168564   ⟹   NP_001162036
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391211,140,740 - 11,200,843 (-)NCBI
GRCm381211,090,202 - 11,150,842 (-)NCBI
MGSCv371211,097,008 - 11,157,648 (-)RGD
Celera1211,445,677 - 11,499,189 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001413254   ⟹   NP_001400183
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391211,140,740 - 11,201,186 (-)NCBI
RefSeq Acc Id: NM_001413255   ⟹   NP_001400184
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391211,140,740 - 11,200,344 (-)NCBI
RefSeq Acc Id: NM_001413256   ⟹   NP_001400185
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391211,140,740 - 11,201,186 (-)NCBI
RefSeq Acc Id: NM_001413257   ⟹   NP_001400186
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391211,140,740 - 11,199,670 (-)NCBI
RefSeq Acc Id: NM_001413258   ⟹   NP_001400187
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391211,140,740 - 11,200,344 (-)NCBI
RefSeq Acc Id: NM_001413259   ⟹   NP_001400188
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391211,140,740 - 11,197,710 (-)NCBI
RefSeq Acc Id: NM_173417   ⟹   NP_775593
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391211,140,740 - 11,200,344 (-)NCBI
GRCm381211,090,202 - 11,150,373 (-)NCBI
MGSCv371211,097,008 - 11,157,648 (-)RGD
Celera1211,445,677 - 11,499,189 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006515080   ⟹   XP_006515143
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391211,140,738 - 11,155,063 (-)NCBI
GRCm381211,090,737 - 11,105,062 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006515082   ⟹   XP_006515145
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391211,140,738 - 11,155,058 (-)NCBI
GRCm381211,090,737 - 11,105,057 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243866   ⟹   XP_011242168
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391211,140,738 - 11,171,583 (-)NCBI
GRCm381211,090,737 - 11,121,586 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243867   ⟹   XP_011242169
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391211,140,738 - 11,200,258 (-)NCBI
GRCm381211,090,737 - 11,150,257 (-)NCBI
Sequence:
RefSeq Acc Id: NP_775593   ⟸   NM_173417
- UniProtKB: Q8BQZ8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001162036   ⟸   NM_001168564
- UniProtKB: Q8BQZ8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006515143   ⟸   XM_006515080
- Peptide Label: isoform X1
- UniProtKB: Q8BQZ8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006515145   ⟸   XM_006515082
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011242169   ⟸   XM_011243867
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011242168   ⟸   XM_011243866
- Peptide Label: isoform X1
- UniProtKB: Q8BQZ8 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000152026   ⟸   ENSMUST00000217974
Ensembl Acc Id: ENSMUSP00000129412   ⟸   ENSMUST00000164495
Ensembl Acc Id: ENSMUSP00000060706   ⟸   ENSMUST00000055673
RefSeq Acc Id: NP_001400185   ⟸   NM_001413256
- UniProtKB: Q8BQZ8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001400183   ⟸   NM_001413254
- UniProtKB: Q8BQZ8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001400187   ⟸   NM_001413258
- UniProtKB: Q8BQZ8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001400184   ⟸   NM_001413255
- UniProtKB: Q8BQZ8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001400186   ⟸   NM_001413257
- UniProtKB: Q8BQZ8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001400188   ⟸   NM_001413259
- UniProtKB: Q8BQZ8 (UniProtKB/Swiss-Prot)
Protein Domains
Ion transport

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BQZ8-F1-model_v2 AlphaFold Q8BQZ8 1-491 view protein structure

Promoters
RGD ID:8677910
Promoter ID:EPDNEW_M16986
Type:multiple initiation site
Name:Kcns3_1
Description:Mus musculus potassium voltage-gated channel, delayed-rectifier,subfamily S, member 3 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381211,150,341 - 11,150,401EPDNEW
RGD ID:6823090
Promoter ID:MM_KWN:11154
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:NM_001168564,   NM_173417
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361211,156,791 - 11,157,291 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1098804 AgrOrtholog
Ensembl Genes ENSMUSG00000043673 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000055673 ENTREZGENE
  ENSMUST00000055673.2 UniProtKB/Swiss-Prot
  ENSMUST00000164495 ENTREZGENE
  ENSMUST00000164495.9 UniProtKB/Swiss-Prot
  ENSMUST00000217974 ENTREZGENE
  ENSMUST00000217974.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Potassium Channel Kv1.1, Chain A UniProtKB/Swiss-Prot
InterPro BTB/POZ_dom UniProtKB/Swiss-Prot
  Ion_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv2 UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv9 UniProtKB/Swiss-Prot
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot
  T1-type_BTB UniProtKB/Swiss-Prot
  VG_K_chnl UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:238076 UniProtKB/Swiss-Prot
MGD MGI:1098804 ENTREZGENE
NCBI Gene Kcns3 ENTREZGENE
PANTHER POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY S MEMBER 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11537 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam BTB_2 UniProtKB/Swiss-Prot
  Ion_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kcns3 PhenoGen
PRINTS KCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KV9CHANNEL UniProtKB/Swiss-Prot
  KVCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SHABCHANNEL UniProtKB/TrEMBL
SMART BTB UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54695 UniProtKB/Swiss-Prot
  Voltage-gated potassium channels UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt KCNS3_MOUSE UniProtKB/Swiss-Prot
  Q3UYJ4_MOUSE UniProtKB/TrEMBL
  Q8BQZ8 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Kcns3  potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3  D12Ertd137e  DNA segment, Chr 12, ERATO Doi 137, expressed  Symbol and/or name change 5135510 APPROVED
2024-08-21 D12Ertd137e  DNA segment, Chr 12, ERATO Doi 137, expressed  Kcns3  potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3  Symbol and/or name change 5135510 APPROVED