MTHFD2P5 (methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 5) - Rat Genome Database

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Gene: MTHFD2P5 (methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 5) Homo sapiens
Analyze
Symbol: MTHFD2P5
Name: methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 5
RGD ID: 7247096
HGNC Page HGNC:48863
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: MTHFD2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38782,588,770 - 82,590,763 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl782,589,848 - 82,590,691 (-)EnsemblGRCh38hg38GRCh38
GRCh37782,218,086 - 82,220,079 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36782,055,922 - 82,058,115 (-)NCBINCBI36Build 36hg18NCBI36
Celera776,918,593 - 76,920,590 (-)NCBICelera
Cytogenetic Map7q21.11NCBI
HuRef776,821,586 - 76,823,579 (-)NCBIHuRef
CHM1_1782,148,152 - 82,150,145 (-)NCBICHM1_1
T2T-CHM13v2.0783,840,033 - 83,842,026 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2781,550,197 - 81,552,190 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:96
Interacting mature miRNAs:98
Transcripts:ENST00000320415
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 193 2 1 5
Below cutoff 54 106 35 11 119 4 155 57 92 5 64 95 7 38 114

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000320415
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl782,589,848 - 82,590,691 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC MTHFD2P5 COSMIC
Ensembl Genes ENSG00000213530 Ensembl
GTEx ENSG00000213530 GTEx
HGNC ID HGNC:48863 ENTREZGENE
Human Proteome Map MTHFD2P5 Human Proteome Map
NCBI Gene MTHFD2P5 ENTREZGENE