CICP20 (capicua transcriptional repressor pseudogene 20) - Rat Genome Database

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Gene: CICP20 (capicua transcriptional repressor pseudogene 20) Homo sapiens
Analyze
Symbol: CICP20
Name: capicua transcriptional repressor pseudogene 20
RGD ID: 7247093
HGNC Page HGNC:48830
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: CIC  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38745,815,326 - 45,819,058 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl745,816,216 - 45,819,016 (-)EnsemblGRCh38hg38GRCh38
GRCh37745,854,925 - 45,858,657 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36745,823,293 - 45,831,555 (-)NCBINCBI36Build 36hg18NCBI36
Celera745,953,924 - 45,957,539 (-)NCBICelera
Cytogenetic Map7p12.3NCBI
HuRef745,739,944 - 45,743,559 (-)NCBIHuRef
CHM1_1745,859,235 - 45,862,850 (-)NCBICHM1_1
T2T-CHM13v2.0745,977,074 - 45,980,806 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2745,894,332 - 45,897,947 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:238
Count of miRNA genes:217
Interacting mature miRNAs:236
Transcripts:ENST00000443330
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 311 4
Below cutoff 743 787 586 196 374 133 2052 752 1663 71 451 528 65 537 1423

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000443330
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl745,816,216 - 45,819,016 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CICP20 COSMIC
Ensembl Genes ENSG00000235955 Ensembl
GTEx ENSG00000235955 GTEx
HGNC ID HGNC:48830 ENTREZGENE
Human Proteome Map CICP20 Human Proteome Map
NCBI Gene CICP20 ENTREZGENE