HNRNPA1P74 (heterogeneous nuclear ribonucleoprotein A1 pseudogene 74) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: HNRNPA1P74 (heterogeneous nuclear ribonucleoprotein A1 pseudogene 74) Homo sapiens
Analyze
Symbol: HNRNPA1P74
Name: heterogeneous nuclear ribonucleoprotein A1 pseudogene 74
RGD ID: 7246762
HGNC Page HGNC:48804
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381554,320,538 - 54,321,732 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1554,320,731 - 54,321,565 (-)EnsemblGRCh38hg38GRCh38
GRCh371554,612,736 - 54,613,930 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1531,508,061 - 31,508,991 (-)NCBICelera
Cytogenetic Map15q21.3NCBI
HuRef1531,444,756 - 31,445,686 (-)NCBIHuRef
CHM1_11554,732,068 - 54,732,998 (-)NCBICHM1_1
T2T-CHM13v2.01552,130,376 - 52,131,570 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:144
Count of miRNA genes:138
Interacting mature miRNAs:142
Transcripts:ENST00000560782
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 1 12 2 1
Below cutoff 28 110 65 8 39 3 102 34 380 15 44 46 5 25 73

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000560782
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1554,320,731 - 54,321,565 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HNRNPA1P74 COSMIC
Ensembl Genes ENSG00000259550 Ensembl
GTEx ENSG00000259550 GTEx
HGNC ID HGNC:48804 ENTREZGENE
Human Proteome Map HNRNPA1P74 Human Proteome Map
NCBI Gene HNRNPA1P74 ENTREZGENE