HNRNPCP7 (heterogeneous nuclear ribonucleoprotein C pseudogene 7) - Rat Genome Database

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Gene: HNRNPCP7 (heterogeneous nuclear ribonucleoprotein C pseudogene 7) Homo sapiens
Analyze
Symbol: HNRNPCP7
Name: heterogeneous nuclear ribonucleoprotein C pseudogene 7
RGD ID: 7246541
HGNC Page HGNC:48818
Description: INTERACTS WITH aristolochic acid A
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: HNRNPC  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38764,500,825 - 64,501,729 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl764,500,825 - 64,501,729 (+)EnsemblGRCh38hg38GRCh38
GRCh37763,961,203 - 63,962,107 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36763,598,638 - 63,599,542 (+)NCBINCBI36Build 36hg18NCBI36
Celera757,680,965 - 57,681,869 (+)NCBICelera
Cytogenetic Map7q11.21NCBI
HuRef760,342,165 - 60,343,069 (+)NCBIHuRef
CHM1_1764,056,447 - 64,057,351 (+)NCBICHM1_1
T2T-CHM13v2.0765,707,798 - 65,708,702 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2763,298,797 - 63,299,701 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:9847074  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:106
Count of miRNA genes:104
Interacting mature miRNAs:105
Transcripts:ENST00000456056
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 12 34 21 1 1 14 18 39 1
Low 2166 2232 1576 521 1002 362 4092 2011 3410 333 1355 1475 168 1 1185 2701 3 1
Below cutoff 221 608 81 76 652 74 203 156 279 69 43 46 5 19 84

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000456056
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl764,500,825 - 64,501,729 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HNRNPCP7 COSMIC
Ensembl Genes ENSG00000228653 Ensembl, ENTREZGENE
GTEx ENSG00000228653 GTEx
HGNC ID HGNC:48818 ENTREZGENE
Human Proteome Map HNRNPCP7 Human Proteome Map
NCBI Gene HNRNPCP7 ENTREZGENE