MIR9-3HG (MIR9-3 host gene) - Rat Genome Database

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Gene: MIR9-3HG (MIR9-3 host gene) Homo sapiens
Analyze
Symbol: MIR9-3HG
Name: MIR9-3 host gene
RGD ID: 7244794
HGNC Page HGNC:27388
Description: INTERACTS WITH 4,4'-sulfonyldiphenol; acrylamide; aflatoxin B1
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: BS-DRL1; LINC00925; lnc-FANCI-2
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381589,361,579 - 89,398,488 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1589,361,579 - 89,424,983 (+)EnsemblGRCh38hg38GRCh38
GRCh371589,904,810 - 89,941,719 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera1566,323,662 - 66,344,098 (+)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1566,034,099 - 66,054,595 (+)NCBIHuRef
CHM1_11589,762,283 - 89,782,728 (+)NCBICHM1_1
T2T-CHM13v2.01587,117,636 - 87,154,521 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14702039   PMID:15701730   PMID:16344560   PMID:28397066   PMID:31938968   PMID:33436409   PMID:33596784   PMID:34210972   PMID:34468010   PMID:35933883   PMID:36408157  


Genomics

Comparative Map Data
MIR9-3HG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381589,361,579 - 89,398,488 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1589,361,579 - 89,424,983 (+)EnsemblGRCh38hg38GRCh38
GRCh371589,904,810 - 89,941,719 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera1566,323,662 - 66,344,098 (+)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1566,034,099 - 66,054,595 (+)NCBIHuRef
CHM1_11589,762,283 - 89,782,728 (+)NCBICHM1_1
T2T-CHM13v2.01587,117,636 - 87,154,521 (+)NCBIT2T-CHM13v2.0
Mir9-3hg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39779,149,774 - 79,184,151 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl779,146,444 - 79,184,154 (+)EnsemblGRCm39 Ensembl
GRCm38779,500,026 - 79,534,403 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl779,500,026 - 79,534,403 (+)EnsemblGRCm38mm10GRCm38
MGSCv37786,644,924 - 86,679,289 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36779,372,593 - 79,406,104 (+)NCBIMGSCv36mm8
Celera776,903,810 - 76,938,181 (+)NCBICelera
Cytogenetic Map7D2NCBI
cM Map745.06NCBI

Variants

.
Variants in MIR9-3HG
7 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 15q25.2-26.3(chr15:83711377-101843270)x3 copy number gain See cases [RCV000135858] Chr15:83711377..101843270 [GRCh38]
Chr15:84380129..102383473 [GRCh37]
Chr15:82171133..100200996 [NCBI36]
Chr15:15q25.2-26.3		 pathogenic
GRCh38/hg38 15q25.3-26.3(chr15:87904735-101843270)x3 copy number gain See cases [RCV000135568] Chr15:87904735..101843270 [GRCh38]
Chr15:88447966..102383473 [GRCh37]
Chr15:86248970..100200996 [NCBI36]
Chr15:15q25.3-26.3		 pathogenic
GRCh38/hg38 15q25.2-26.3(chr15:82859676-101810992)x3 copy number gain See cases [RCV000136849] Chr15:82859676..101810992 [GRCh38]
Chr15:83528428..102351195 [GRCh37]
Chr15:81325482..100168718 [NCBI36]
Chr15:15q25.2-26.3		 pathogenic
GRCh38/hg38 15q25.3-26.3(chr15:85826665-101920998)x4 copy number gain See cases [RCV000137264] Chr15:85826665..101920998 [GRCh38]
Chr15:86369896..102461201 [GRCh37]
Chr15:84170900..100278724 [NCBI36]
Chr15:15q25.3-26.3		 pathogenic
GRCh38/hg38 15q25.3-26.3(chr15:85397539-101888909)x3 copy number gain See cases [RCV000141899] Chr15:85397539..101888909 [GRCh38]
Chr15:85940770..102429112 [GRCh37]
Chr15:83741774..100246635 [NCBI36]
Chr15:15q25.3-26.3		 pathogenic
GRCh38/hg38 15q23-26.3(chr15:72154949-101920998)x3 copy number gain See cases [RCV000143019] Chr15:72154949..101920998 [GRCh38]
Chr15:72447290..102461201 [GRCh37]
Chr15:70234344..100278724 [NCBI36]
Chr15:15q23-26.3		 pathogenic
GRCh38/hg38 15q22.2-26.3(chr15:59828460-101920998)x3 copy number gain See cases [RCV000142915] Chr15:59828460..101920998 [GRCh38]
Chr15:60120659..102461201 [GRCh37]
Chr15:57907951..100278724 [NCBI36]
Chr15:15q22.2-26.3		 pathogenic
GRCh38/hg38 15q26.1-26.3(chr15:88676575-98364743)x3 copy number gain See cases [RCV000142727] Chr15:88676575..98364743 [GRCh38]
Chr15:89219806..98907972 [GRCh37]
Chr15:87020810..96725495 [NCBI36]
Chr15:15q26.1-26.3		 pathogenic
GRCh38/hg38 15q24.2-26.3(chr15:75307767-101723215)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052346]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052346]|See cases [RCV000052346] Chr15:75307767..101723215 [GRCh38]
Chr15:75600108..102263418 [GRCh37]
Chr15:73387161..100080941 [NCBI36]
Chr15:15q24.2-26.3		 pathogenic
GRCh38/hg38 15q24.3-26.3(chr15:77543797-101843411)x3 copy number gain See cases [RCV000052347] Chr15:77543797..101843411 [GRCh38]
Chr15:77836139..102383614 [GRCh37]
Chr15:75623194..100201137 [NCBI36]
Chr15:15q24.3-26.3		 pathogenic
GRCh38/hg38 15q25.2-26.3(chr15:84169153-101904929)x3 copy number gain See cases [RCV000052352] Chr15:84169153..101904929 [GRCh38]
Chr15:84837905..102445132 [GRCh37]
Chr15:82628909..100262655 [NCBI36]
Chr15:15q25.2-26.3		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2488
Count of miRNA genes:803
Interacting mature miRNAs:943
Transcripts:ENST00000536780, ENST00000538734, ENST00000546186, ENST00000558692, ENST00000558754, ENST00000558982, ENST00000559235, ENST00000560008, ENST00000560596, ENST00000560663, ENST00000561037, ENST00000561327
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406928258GWAS577234_Hbody height QTL GWAS577234 (human)3e-08body height (VT:0001253)body height (CMO:0000106)158936192189361922Human
407324163GWAS973139_Hinsomnia QTL GWAS973139 (human)2e-08insomnia158937040189370402Human
406916068GWAS565044_Hsmoking behavior QTL GWAS565044 (human)3e-09smoking behavior158937040189370402Human
407305152GWAS954128_Hlean body mass QTL GWAS954128 (human)1e-11body lean mass (VT:0010483)total body lean mass (CMO:0003950)158938495889384959Human
407326369GWAS975345_Hretinal drusen QTL GWAS975345 (human)0.000002retinal drusen158938791789387918Human
406902983GWAS551959_Hfat body mass QTL GWAS551959 (human)0.000005body fat mass (VT:0010482)total body fat mass (CMO:0000305)158938848589388486Human
406981994GWAS630970_Hwhite matter microstructure measurement QTL GWAS630970 (human)9e-10white matter microstructure measurement158937671489376715Human
407182125GWAS831101_HStuttering QTL GWAS831101 (human)0.000002Stuttering158938428489384285Human
407320653GWAS969629_Hbody mass index QTL GWAS969629 (human)6e-10body mass indexbody mass index (BMI) (CMO:0000105)158938495889384959Human
407190505GWAS839481_Hdiet measurement QTL GWAS839481 (human)4e-09diet measurementfood intake measurement (CMO:0000772)158936926789369268Human
407325963GWAS974939_Hretinal drusen QTL GWAS974939 (human)0.00001retinal drusen158939629789396298Human
407092269GWAS741245_Htobacco smoke exposure measurement QTL GWAS741245 (human)3e-08tobacco smoke exposure measurement158938495889384959Human
406935662GWAS584638_Hsmoking initiation QTL GWAS584638 (human)1e-16smoking initiation158938356889383569Human
407329527GWAS978503_Hschizophrenia QTL GWAS978503 (human)0.0000001schizophrenia158938495889384959Human
407055957GWAS704933_Hinsomnia measurement QTL GWAS704933 (human)9e-09insomnia measurement158937040189370402Human
407195538GWAS844514_Hsmoking status measurement QTL GWAS844514 (human)3e-08smoking status measurement158937040189370402Human
406909079GWAS558055_Hfat body mass QTL GWAS558055 (human)0.000006body fat mass (VT:0010482)total body fat mass (CMO:0000305)158938848589388486Human
406997563GWAS646539_Hbiological sex QTL GWAS646539 (human)3e-09biological sex158937671489376715Human
407328222GWAS977198_Hretinal drusen QTL GWAS977198 (human)0.000005retinal drusen158938791789387918Human
406941210GWAS590186_Hinsomnia measurement QTL GWAS590186 (human)1e-09insomnia measurement158937873889378739Human
407169049GWAS818025_Happendicular lean mass QTL GWAS818025 (human)1e-12appendicular lean mass158936192189361922Human
407021023GWAS669999_Hbody mass index QTL GWAS669999 (human)9e-13body mass indexbody mass index (BMI) (CMO:0000105)158938495889384959Human
406948447GWAS597423_Hsmoking status measurement QTL GWAS597423 (human)4e-09smoking status measurement158938791789387918Human
406978110GWAS627086_Hwhite matter microstructure measurement QTL GWAS627086 (human)5e-11white matter microstructure measurement158937671489376715Human

Markers in Region
D15S1498  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371589,924,456 - 89,924,581UniSTSGRCh37
Build 361587,725,460 - 87,725,585RGDNCBI36
Celera1566,326,845 - 66,326,970RGD
Cytogenetic Map15q26.1UniSTS
HuRef1566,037,282 - 66,037,407UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1171 2296 2576 2184 4865 1595 2151 5 514 1701 353 2179 6596 6127 31 3664 789 1680 1529 171 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_015411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_133001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_133002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_133003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC013391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC133637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK096359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK123792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK125292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL520041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL520042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL526389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL526577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX441353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA059714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB020558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB067527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB068800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB452761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB454083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MT669800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MT669801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MT669802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MT669803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MT669804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MT669805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MT669806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MT669807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MT669808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MT669809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MT669810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MT669811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MT669812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MT669813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000536780
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,361,579 - 89,398,487 (+)Ensembl
Ensembl Acc Id: ENST00000538734
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,379,233 - 89,396,468 (+)Ensembl
Ensembl Acc Id: ENST00000546186
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,379,332 - 89,396,413 (+)Ensembl
Ensembl Acc Id: ENST00000558692
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,377,955 - 89,395,351 (+)Ensembl
Ensembl Acc Id: ENST00000558754
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,378,563 - 89,396,795 (+)Ensembl
Ensembl Acc Id: ENST00000558982
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,379,124 - 89,395,119 (+)Ensembl
Ensembl Acc Id: ENST00000559235
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,377,944 - 89,395,357 (+)Ensembl
Ensembl Acc Id: ENST00000560596
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,371,985 - 89,395,350 (+)Ensembl
Ensembl Acc Id: ENST00000560663
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,369,155 - 89,387,843 (+)Ensembl
Ensembl Acc Id: ENST00000561037
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,382,500 - 89,395,040 (+)Ensembl
Ensembl Acc Id: ENST00000561327
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,362,487 - 89,395,331 (+)Ensembl
Ensembl Acc Id: ENST00000654079
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,368,082 - 89,398,484 (+)Ensembl
Ensembl Acc Id: ENST00000654171
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,362,474 - 89,398,485 (+)Ensembl
Ensembl Acc Id: ENST00000654184
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,362,509 - 89,398,485 (+)Ensembl
Ensembl Acc Id: ENST00000655673
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,369,099 - 89,395,350 (+)Ensembl
Ensembl Acc Id: ENST00000655914
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,382,474 - 89,389,522 (+)Ensembl
Ensembl Acc Id: ENST00000656907
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,369,103 - 89,395,349 (+)Ensembl
Ensembl Acc Id: ENST00000657897
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,362,509 - 89,398,484 (+)Ensembl
Ensembl Acc Id: ENST00000658194
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,362,516 - 89,398,484 (+)Ensembl
Ensembl Acc Id: ENST00000658764
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,368,212 - 89,398,484 (+)Ensembl
Ensembl Acc Id: ENST00000658770
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,371,604 - 89,398,484 (+)Ensembl
Ensembl Acc Id: ENST00000659235
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,362,662 - 89,398,484 (+)Ensembl
Ensembl Acc Id: ENST00000659850
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,369,114 - 89,395,350 (+)Ensembl
Ensembl Acc Id: ENST00000660601
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,379,262 - 89,396,468 (+)Ensembl
Ensembl Acc Id: ENST00000660922
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,379,299 - 89,396,464 (+)Ensembl
Ensembl Acc Id: ENST00000661036
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,362,517 - 89,398,484 (+)Ensembl
Ensembl Acc Id: ENST00000661040
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,362,509 - 89,398,484 (+)Ensembl
Ensembl Acc Id: ENST00000662043
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,369,121 - 89,395,998 (+)Ensembl
Ensembl Acc Id: ENST00000662136
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,382,474 - 89,396,457 (+)Ensembl
Ensembl Acc Id: ENST00000662152
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,377,944 - 89,389,522 (+)Ensembl
Ensembl Acc Id: ENST00000662255
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,382,483 - 89,395,350 (+)Ensembl
Ensembl Acc Id: ENST00000662942
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,369,121 - 89,395,350 (+)Ensembl
Ensembl Acc Id: ENST00000663717
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,386,711 - 89,398,484 (+)Ensembl
Ensembl Acc Id: ENST00000664345
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,382,483 - 89,395,357 (+)Ensembl
Ensembl Acc Id: ENST00000664499
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,382,474 - 89,395,362 (+)Ensembl
Ensembl Acc Id: ENST00000664594
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,382,504 - 89,395,351 (+)Ensembl
Ensembl Acc Id: ENST00000664925
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,382,474 - 89,395,351 (+)Ensembl
Ensembl Acc Id: ENST00000665086
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,379,585 - 89,395,337 (+)Ensembl
Ensembl Acc Id: ENST00000665619
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,377,938 - 89,395,359 (+)Ensembl
Ensembl Acc Id: ENST00000665852
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,377,969 - 89,395,990 (+)Ensembl
Ensembl Acc Id: ENST00000666816
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,371,603 - 89,398,484 (+)Ensembl
Ensembl Acc Id: ENST00000667285
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,377,739 - 89,396,468 (+)Ensembl
Ensembl Acc Id: ENST00000667575
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,382,474 - 89,395,351 (+)Ensembl
Ensembl Acc Id: ENST00000668524
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,377,920 - 89,396,468 (+)Ensembl
Ensembl Acc Id: ENST00000669037
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,369,125 - 89,395,359 (+)Ensembl
Ensembl Acc Id: ENST00000669098
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,378,966 - 89,398,484 (+)Ensembl
Ensembl Acc Id: ENST00000669499
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,362,686 - 89,398,484 (+)Ensembl
Ensembl Acc Id: ENST00000669645
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,379,251 - 89,396,463 (+)Ensembl
Ensembl Acc Id: ENST00000670238
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,379,302 - 89,396,466 (+)Ensembl
Ensembl Acc Id: ENST00000670485
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,382,497 - 89,395,086 (+)Ensembl
Ensembl Acc Id: ENST00000670779
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,368,141 - 89,398,487 (+)Ensembl
Ensembl Acc Id: ENST00000671075
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,386,464 - 89,398,484 (+)Ensembl
Ensembl Acc Id: ENST00000671447
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,387,332 - 89,398,484 (+)Ensembl
Ensembl Acc Id: ENST00000701636
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1589,378,121 - 89,424,983 (+)Ensembl
RefSeq Acc Id: NR_015411
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,378,104 - 89,398,488 (+)NCBI
GRCh371589,921,273 - 89,941,718 (+)NCBI
HuRef1566,034,099 - 66,054,595 (+)NCBI
CHM1_11589,762,283 - 89,782,728 (+)NCBI
T2T-CHM13v2.01587,134,136 - 87,154,521 (+)NCBI
Sequence:
RefSeq Acc Id: NR_133001
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,361,579 - 89,398,488 (+)NCBI
CHM1_11589,745,854 - 89,782,728 (+)NCBI
T2T-CHM13v2.01587,117,636 - 87,154,521 (+)NCBI
Sequence:
RefSeq Acc Id: NR_133002
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,362,509 - 89,398,488 (+)NCBI
CHM1_11589,746,796 - 89,782,728 (+)NCBI
T2T-CHM13v2.01587,118,566 - 87,154,521 (+)NCBI
Sequence:
RefSeq Acc Id: NR_133003
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,362,509 - 89,398,488 (+)NCBI
CHM1_11589,752,374 - 89,782,728 (+)NCBI
T2T-CHM13v2.01587,118,566 - 87,154,521 (+)NCBI
Sequence:
RefSeq Acc Id: NR_190290
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,378,104 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,134,136 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190291
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,378,104 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,134,136 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190292
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,378,104 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,134,136 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190293
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,378,104 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,134,136 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190294
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,378,104 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,134,136 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190295
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,378,104 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,134,136 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190296
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,378,104 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,134,136 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190297
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,378,104 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,134,136 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190298
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,379,119 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,135,151 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190299
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,379,119 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,135,151 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190300
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,379,119 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,135,151 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190301
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,379,119 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,135,151 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190302
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,379,119 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,135,151 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190303
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,379,119 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,135,151 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190304
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,379,119 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,135,151 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190305
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,379,119 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,135,151 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190306
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,379,119 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,135,151 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190307
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,379,119 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,135,151 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190308
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,379,119 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,135,151 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190309
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,379,119 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,135,151 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190310
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,361,579 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,117,636 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190311
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,362,509 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,118,566 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190312
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,362,509 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,118,566 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190313
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,362,509 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,118,566 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190314
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,362,509 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,118,566 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190315
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,362,509 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,118,566 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190316
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,362,509 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,118,566 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190317
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,362,509 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,118,566 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190318
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,362,509 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,118,566 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190319
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,362,509 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,118,566 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190320
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,362,509 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,118,566 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190321
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,362,509 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,118,566 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190322
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,362,509 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,118,566 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190323
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,362,509 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,118,566 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190324
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,362,509 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,118,566 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190325
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,362,509 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,118,566 - 87,154,521 (+)NCBI
RefSeq Acc Id: NR_190326
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,362,509 - 89,398,488 (+)NCBI
T2T-CHM13v2.01587,118,566 - 87,154,521 (+)NCBI
Promoters
RGD ID:15096932
Promoter ID:EPDNEWNC_H1762
Type:initiation region
Name:MIR9-3HG_1
Description:MIR9-3 host gene [Source:HGNC Symbol;Acc:HGNC:27388]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,362,509 - 89,362,569EPDNEWNC
RGD ID:15096928
Promoter ID:EPDNEWNC_H1763
Type:initiation region
Name:MIR9-3HG_2
Description:MIR9-3 host gene [Source:HGNC Symbol;Acc:HGNC:27388]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381589,378,097 - 89,378,157EPDNEWNC

Additional Information

Database Acc Id Source(s)
COSMIC MIR9-3HG COSMIC
Ensembl Genes ENSG00000255571 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000536780 ENTREZGENE
  ENST00000654079 ENTREZGENE
  ENST00000654171 ENTREZGENE
  ENST00000654184 ENTREZGENE
  ENST00000657897 ENTREZGENE
  ENST00000658764 ENTREZGENE
  ENST00000658770 ENTREZGENE
  ENST00000659235 ENTREZGENE
  ENST00000661036 ENTREZGENE
  ENST00000661040 ENTREZGENE
  ENST00000666816 ENTREZGENE
  ENST00000669499 ENTREZGENE
  ENST00000670779 ENTREZGENE
GTEx ENSG00000255571 GTEx
HGNC ID HGNC:27388 ENTREZGENE
Human Proteome Map MIR9-3HG Human Proteome Map
NCBI Gene LINC00925 ENTREZGENE
RNAcentral URS000075DAA9 RNACentral
  URS00007672C0 RNACentral
  URS00008BB927 RNACentral
  URS00008E3959 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-10-20 MIR9-3HG  MIR9-3 host gene  LINC00925  long intergenic non-protein coding RNA 925  Symbol and/or name change 5135510 APPROVED