TUBB8P1 (tubulin beta 8 class VIII pseudogene 1) - Rat Genome Database

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Gene: TUBB8P1 (tubulin beta 8 class VIII pseudogene 1) Homo sapiens
Analyze
Symbol: TUBB8P1
Name: tubulin beta 8 class VIII pseudogene 1
RGD ID: 7207647
HGNC Page HGNC:42182
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: TUBB8  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38921,811,489 - 21,812,362 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl921,811,621 - 21,812,347 (-)EnsemblGRCh38hg38GRCh38
GRCh37921,811,488 - 21,812,361 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera921,750,011 - 21,750,707 (-)NCBICelera
Cytogenetic Map9p21.3NCBI
HuRef921,775,002 - 21,775,698 (-)NCBIHuRef
CHM1_1921,811,535 - 21,812,231 (-)NCBICHM1_1
T2T-CHM13v2.0921,825,719 - 21,826,592 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:87
Interacting mature miRNAs:87
Transcripts:ENST00000447235
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-78937  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37921,811,331 - 21,811,655UniSTSGRCh37
Build 36921,801,331 - 21,801,655RGDNCBI36
Celera921,749,692 - 21,750,016RGD
Cytogenetic Map9p21UniSTS
HuRef921,774,683 - 21,775,007UniSTS
TNG Radiation Hybrid Map911920.0UniSTS
SHGC-82272  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37921,811,776 - 21,812,072UniSTSGRCh37
Build 36921,801,776 - 21,802,072RGDNCBI36
Celera921,750,137 - 21,750,433RGD
Cytogenetic Map9p21UniSTS
HuRef921,775,128 - 21,775,424UniSTS
TNG Radiation Hybrid Map911897.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 3 1 3 1 5 1 1
Low 657 359 423 154 554 80 1600 237 515 78 496 650 82 421 867 2
Below cutoff 1519 1728 1071 354 674 268 2245 1381 1580 202 765 776 87 725 1503

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000447235
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl921,811,621 - 21,812,347 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TUBB8P1 COSMIC
Ensembl Genes ENSG00000229298 Ensembl, ENTREZGENE
GTEx ENSG00000229298 GTEx
HGNC ID HGNC:42182 ENTREZGENE
Human Proteome Map TUBB8P1 Human Proteome Map
NCBI Gene TUBB8P1 ENTREZGENE