HNRNPRP1 (heterogeneous nuclear ribonucleoprotein R pseudogene 1) - Rat Genome Database

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Gene: HNRNPRP1 (heterogeneous nuclear ribonucleoprotein R pseudogene 1) Homo sapiens
Analyze
Symbol: HNRNPRP1
Name: heterogeneous nuclear ribonucleoprotein R pseudogene 1
RGD ID: 7204785
HGNC Page HGNC:44907
Description: INTERACTS WITH methylparaben
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: HNRNPR  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381021,623,902 - 21,626,356 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1021,624,592 - 21,626,286 (-)EnsemblGRCh38hg38GRCh38
GRCh371021,912,831 - 21,915,285 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361021,952,860 - 21,955,300 (-)NCBINCBI36Build 36hg18NCBI36
Celera1021,600,611 - 21,603,044 (-)NCBICelera
Cytogenetic Map10p12.31NCBI
HuRef1021,575,168 - 21,577,619 (-)NCBIHuRef
CHM1_11021,913,664 - 21,916,115 (-)NCBICHM1_1
T2T-CHM13v2.01021,643,028 - 21,645,484 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:97
Interacting mature miRNAs:98
Transcripts:ENST00000453465
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH70827  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371629,676,875 - 29,677,044UniSTSGRCh37
GRCh371021,913,604 - 21,913,903UniSTSGRCh37
Build 361021,953,610 - 21,953,909RGDNCBI36
Celera1673,118,958 - 73,119,127UniSTS
Celera1021,601,363 - 21,601,662RGD
Cytogenetic Map10p12.31UniSTS
Cytogenetic Map16p11.2UniSTS
HuRef1627,338,357 - 27,338,526UniSTS
HuRef1100,031,356 - 100,031,661UniSTS
HuRef1021,575,918 - 21,576,217UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 5
Low 5 17 13 11 342 11 34 2 40 17 213 3 4 20 1
Below cutoff 1052 1232 787 179 617 96 2364 910 1921 94 682 798 84 616 1473

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000453465
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1021,624,592 - 21,626,286 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HNRNPRP1 COSMIC
Ensembl Genes ENSG00000223984 Ensembl
GTEx ENSG00000223984 GTEx
HGNC ID HGNC:44907 ENTREZGENE
Human Proteome Map HNRNPRP1 Human Proteome Map
NCBI Gene HNRNPRP1 ENTREZGENE