CHCHD4P4 (coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 4) - Rat Genome Database

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Gene: CHCHD4P4 (coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 4) Homo sapiens
Analyze
Symbol: CHCHD4P4
Name: coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 4
RGD ID: 7174984
HGNC Page HGNC:44492
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: CHCHD4  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38311,234,056 - 11,234,777 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl311,234,256 - 11,234,582 (-)EnsemblGRCh38hg38GRCh38
GRCh37311,275,742 - 11,276,463 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36311,250,904 - 11,251,366 (-)NCBINCBI36Build 36hg18NCBI36
Celera311,211,373 - 11,211,800 (-)NCBICelera
Cytogenetic Map3p25.3NCBI
HuRef311,210,233 - 11,210,657 (-)NCBIHuRef
CHM1_1311,225,991 - 11,226,415 (-)NCBICHM1_1
T2T-CHM13v2.0311,229,008 - 11,229,729 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:211
Count of miRNA genes:207
Interacting mature miRNAs:211
Transcripts:ENST00000437690
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 34 8 2 1 7 1 39 8 21 7 26 19 7 25
Below cutoff 481 333 147 48 119 27 749 327 420 45 204 184 24 223 466 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000437690
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,234,256 - 11,234,582 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CHCHD4P4 COSMIC
Ensembl Genes ENSG00000213964 Ensembl
GTEx ENSG00000213964 GTEx
HGNC ID HGNC:44492 ENTREZGENE
Human Proteome Map CHCHD4P4 Human Proteome Map
NCBI Gene CHCHD4P4 ENTREZGENE