Pacsin2 (protein kinase C and casein kinase substrate in neurons 2) - Rat Genome Database

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Gene: Pacsin2 (protein kinase C and casein kinase substrate in neurons 2) Mus musculus
Analyze
Symbol: Pacsin2
Name: protein kinase C and casein kinase substrate in neurons 2
RGD ID: 69457
MGI Page MGI
Description: Enables cytoskeletal protein binding activity and lipid binding activity. Involved in cell projection morphogenesis; modulation of chemical synaptic transmission; and plasma membrane tubulation. Acts upstream of or within negative regulation of endocytosis. Located in caveola; cell-cell junction; and cytosol. Is active in glutamatergic synapse. Is expressed in several structures, including alimentary system; aorta; cerebral cortex ventricular layer; genitourinary system; and thymus. Orthologous to human PACSIN2 (protein kinase C and casein kinase substrate in neurons 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI197433; protein kinase C and casein kinase substrate in neurons protein 2; SdpII; syndapin 2; Syndapin II; syndapin-2; syndapin-II
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391583,259,812 - 83,348,800 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1583,259,808 - 83,348,807 (-)EnsemblGRCm39 Ensembl
GRCm381583,375,607 - 83,464,610 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1583,375,607 - 83,464,606 (-)EnsemblGRCm38mm10GRCm38
MGSCv371583,206,037 - 83,295,036 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361583,203,884 - 83,260,585 (-)NCBIMGSCv36mm8
Celera1585,508,985 - 85,597,984 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1539.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
alpha-pinene  (ISO)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cisplatin  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dimethylarsinic acid  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
flavonoids  (ISO)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
furan  (ISO)
gentamycin  (ISO)
hydrazine  (EXP)
hydroquinone O-beta-D-glucopyranoside  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
lipopolysaccharide  (ISO)
Mesaconitine  (ISO)
methyl methanesulfonate  (ISO)
nefazodone  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phorone  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
propiconazole  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
sodium arsenite  (EXP,ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
topotecan  (ISO)
triadimefon  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
trovafloxacin  (ISO)
tungsten  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10431838   PMID:10512203   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11082044   PMID:11179684   PMID:11217851   PMID:11544199   PMID:12477932  
PMID:14610273   PMID:15489334   PMID:15782199   PMID:15840001   PMID:15930129   PMID:16141072   PMID:16141073   PMID:16537572   PMID:17967808   PMID:18456257   PMID:18799693   PMID:20188097  
PMID:21267068   PMID:21610094   PMID:21807942   PMID:21873635   PMID:22718246   PMID:22794259   PMID:23235565   PMID:23604909   PMID:23793062   PMID:23918399   PMID:24013648   PMID:24194600  
PMID:24385601   PMID:26884322   PMID:27626380   PMID:29107716   PMID:31390291   PMID:32325033   PMID:32888949   PMID:34321999   PMID:34325130   PMID:34990060   PMID:35449600   PMID:36293380  
PMID:37678551   PMID:38355793  


Genomics

Comparative Map Data
Pacsin2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391583,259,812 - 83,348,800 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1583,259,808 - 83,348,807 (-)EnsemblGRCm39 Ensembl
GRCm381583,375,607 - 83,464,610 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1583,375,607 - 83,464,606 (-)EnsemblGRCm38mm10GRCm38
MGSCv371583,206,037 - 83,295,036 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361583,203,884 - 83,260,585 (-)NCBIMGSCv36mm8
Celera1585,508,985 - 85,597,984 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1539.4NCBI
PACSIN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382242,869,766 - 43,015,149 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2242,835,412 - 43,015,149 (-)EnsemblGRCh38hg38GRCh38
GRCh372243,265,772 - 43,411,155 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362241,596,880 - 41,672,991 (-)NCBINCBI36Build 36hg18NCBI36
Build 342241,590,274 - 41,735,649NCBI
Celera2227,176,274 - 27,321,760 (-)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2226,224,672 - 26,369,391 (-)NCBIHuRef
CHM1_12243,225,547 - 43,371,023 (-)NCBICHM1_1
T2T-CHM13v2.02243,350,692 - 43,496,154 (-)NCBIT2T-CHM13v2.0
Pacsin2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87116,385,571 - 116,478,609 (-)NCBIGRCr8
mRatBN7.27114,505,525 - 114,599,087 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7114,505,152 - 114,598,546 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7116,260,421 - 116,322,340 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07118,485,477 - 118,547,804 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07118,454,949 - 118,517,274 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07124,224,210 - 124,317,407 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7124,223,633 - 124,317,379 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07124,214,202 - 124,307,009 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47121,484,248 - 121,546,498 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17121,487,482 - 121,579,686 (+)NCBI
Celera7110,819,040 - 110,881,274 (-)NCBICelera
Cytogenetic Map7q34NCBI
Pacsin2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541328,116,961 - 28,140,810 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541328,119,769 - 28,209,258 (-)NCBIChiLan1.0ChiLan1.0
PACSIN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22352,697,023 - 52,840,365 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12255,389,852 - 55,533,206 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02223,757,565 - 23,900,837 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12241,908,922 - 42,052,327 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2241,908,922 - 41,999,692 (-)Ensemblpanpan1.1panPan2
PACSIN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11022,512,058 - 22,648,553 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1022,512,077 - 22,647,322 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1022,448,532 - 22,584,797 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01023,256,673 - 23,393,490 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1023,256,694 - 23,393,481 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11022,975,693 - 23,111,993 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01023,294,958 - 23,431,287 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01023,469,880 - 23,606,571 (+)NCBIUU_Cfam_GSD_1.0
Pacsin2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049456,129,392 - 6,241,034 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936718739,133 - 801,662 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936718739,133 - 850,775 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PACSIN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl55,853,377 - 5,985,169 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.155,853,377 - 5,985,174 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.253,320,905 - 3,358,652 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PACSIN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11925,412,627 - 25,553,919 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1925,412,394 - 25,435,169 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604599,894,616 - 100,039,255 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pacsin2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247525,950,890 - 6,041,466 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247525,927,096 - 6,041,458 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pacsin2
2816 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2023
Count of miRNA genes:489
Interacting mature miRNAs:619
Transcripts:ENSMUST00000056177, ENSMUST00000165095, ENSMUST00000171436
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
11532732Pitm5_mprion incubation time 5 (mouse)158296406187054388Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82615474104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse

Markers in Region
RH135963  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381583,376,809 - 83,376,987UniSTSGRCm38
MGSCv371583,207,239 - 83,207,417UniSTSGRCm37
Celera1585,510,187 - 85,510,365UniSTS
Cytogenetic Map15E1UniSTS
RH126385  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381583,397,887 - 83,398,098UniSTSGRCm38
MGSCv371583,228,317 - 83,228,528UniSTSGRCm37
Celera1585,531,265 - 85,531,476UniSTS
Cytogenetic Map15E1UniSTS
Whitehead/MRC_RH15730.29UniSTS
UniSTS:489243  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381583,405,525 - 83,406,155UniSTSGRCm38
MGSCv371583,235,955 - 83,236,585UniSTSGRCm37
Celera1585,538,903 - 85,539,533UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map5G1.3UniSTS
UniSTS:495064  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381583,405,544 - 83,406,154UniSTSGRCm38
MGSCv371583,235,974 - 83,236,584UniSTSGRCm37
Celera1585,538,922 - 85,539,532UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map5G1.3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001159509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001159510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011245633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC165945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF128535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL583889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB014072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB860324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY235086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA560112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF168957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ118256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000056177   ⟹   ENSMUSP00000058320
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1583,260,323 - 83,348,771 (-)Ensembl
GRCm38.p6 Ensembl1583,376,122 - 83,464,570 (-)Ensembl
Ensembl Acc Id: ENSMUST00000165095   ⟹   ENSMUSP00000130098
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1583,260,319 - 83,317,016 (-)Ensembl
GRCm38.p6 Ensembl1583,376,118 - 83,432,815 (-)Ensembl
Ensembl Acc Id: ENSMUST00000171436   ⟹   ENSMUSP00000131504
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1583,259,808 - 83,348,807 (-)Ensembl
GRCm38.p6 Ensembl1583,375,607 - 83,464,606 (-)Ensembl
Ensembl Acc Id: ENSMUST00000229337   ⟹   ENSMUSP00000155845
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1583,274,703 - 83,348,753 (-)Ensembl
GRCm38.p6 Ensembl1583,390,502 - 83,464,552 (-)Ensembl
Ensembl Acc Id: ENSMUST00000230030   ⟹   ENSMUSP00000155333
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1583,261,779 - 83,272,803 (-)Ensembl
GRCm38.p6 Ensembl1583,377,578 - 83,388,602 (-)Ensembl
Ensembl Acc Id: ENSMUST00000230679   ⟹   ENSMUSP00000155481
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1583,260,323 - 83,348,771 (-)Ensembl
GRCm38.p6 Ensembl1583,376,122 - 83,464,570 (-)Ensembl
Ensembl Acc Id: ENSMUST00000230816   ⟹   ENSMUSP00000155068
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1583,272,751 - 83,307,991 (-)Ensembl
GRCm38.p6 Ensembl1583,388,550 - 83,423,790 (-)Ensembl
Ensembl Acc Id: ENSMUST00000230960
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1583,268,817 - 83,271,009 (-)Ensembl
GRCm38.p6 Ensembl1583,384,616 - 83,386,808 (-)Ensembl
Ensembl Acc Id: ENSMUST00000231043
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1583,266,026 - 83,269,990 (-)Ensembl
GRCm38.p6 Ensembl1583,381,825 - 83,385,789 (-)Ensembl
Ensembl Acc Id: ENSMUST00000231184   ⟹   ENSMUSP00000155334
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1583,260,323 - 83,317,025 (-)Ensembl
GRCm38.p6 Ensembl1583,376,122 - 83,432,824 (-)Ensembl
Ensembl Acc Id: ENSMUST00000231946   ⟹   ENSMUSP00000155925
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1583,261,539 - 83,269,292 (-)Ensembl
GRCm38.p6 Ensembl1583,377,338 - 83,385,091 (-)Ensembl
RefSeq Acc Id: NM_001159509   ⟹   NP_001152981
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,259,812 - 83,348,784 (-)NCBI
GRCm381583,375,607 - 83,464,606 (-)ENTREZGENE
MGSCv371583,206,037 - 83,295,036 (-)RGD
Celera1585,508,985 - 85,597,984 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001159510   ⟹   NP_001152982
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,259,812 - 83,317,037 (-)NCBI
GRCm381583,375,607 - 83,432,850 (-)NCBI
MGSCv371583,206,037 - 83,295,036 (-)RGD
Celera1585,508,985 - 85,597,984 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001358641   ⟹   NP_001345570
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,259,812 - 83,348,784 (-)NCBI
GRCm381583,375,607 - 83,464,606 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001358642   ⟹   NP_001345571
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,259,812 - 83,348,784 (-)NCBI
GRCm381583,375,607 - 83,464,606 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001358643   ⟹   NP_001345572
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,259,812 - 83,348,784 (-)NCBI
GRCm381583,375,607 - 83,464,606 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001358644   ⟹   NP_001345573
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,259,812 - 83,332,071 (-)NCBI
GRCm381583,375,607 - 83,447,880 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001411850   ⟹   NP_001398779
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,259,812 - 83,348,498 (-)NCBI
RefSeq Acc Id: NM_001411851   ⟹   NP_001398780
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,259,812 - 83,348,784 (-)NCBI
RefSeq Acc Id: NM_001411852   ⟹   NP_001398781
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,259,812 - 83,348,784 (-)NCBI
RefSeq Acc Id: NM_011862   ⟹   NP_035992
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,259,812 - 83,317,037 (-)NCBI
GRCm381583,375,607 - 83,432,850 (-)NCBI
MGSCv371583,206,037 - 83,295,036 (-)RGD
Celera1585,508,985 - 85,597,984 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_177947
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,259,812 - 83,348,784 (-)NCBI
RefSeq Acc Id: XM_006520980   ⟹   XP_006521043
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,260,323 - 83,317,203 (-)NCBI
GRCm381583,376,122 - 83,432,849 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006520981   ⟹   XP_006521044
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,260,323 - 83,332,151 (-)NCBI
GRCm381583,376,122 - 83,447,923 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006520982   ⟹   XP_006521045
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,260,323 - 83,309,654 (-)NCBI
GRCm381583,376,122 - 83,425,453 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006520983   ⟹   XP_006521046
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,260,323 - 83,317,048 (-)NCBI
GRCm381583,376,122 - 83,432,851 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011245633   ⟹   XP_011243935
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,260,323 - 83,348,800 (-)NCBI
GRCm381583,376,122 - 83,464,597 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036159409   ⟹   XP_036015302
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391583,260,323 - 83,329,674 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001152981 (Get FASTA)   NCBI Sequence Viewer  
  NP_001152982 (Get FASTA)   NCBI Sequence Viewer  
  NP_001345570 (Get FASTA)   NCBI Sequence Viewer  
  NP_001345571 (Get FASTA)   NCBI Sequence Viewer  
  NP_001345572 (Get FASTA)   NCBI Sequence Viewer  
  NP_001345573 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398779 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398780 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398781 (Get FASTA)   NCBI Sequence Viewer  
  NP_035992 (Get FASTA)   NCBI Sequence Viewer  
  XP_006521043 (Get FASTA)   NCBI Sequence Viewer  
  XP_006521044 (Get FASTA)   NCBI Sequence Viewer  
  XP_006521045 (Get FASTA)   NCBI Sequence Viewer  
  XP_006521046 (Get FASTA)   NCBI Sequence Viewer  
  XP_011243935 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015302 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD41780 (Get FASTA)   NCBI Sequence Viewer  
  AAH23502 (Get FASTA)   NCBI Sequence Viewer  
  BAC38907 (Get FASTA)   NCBI Sequence Viewer  
  BAE25557 (Get FASTA)   NCBI Sequence Viewer  
  BAE32828 (Get FASTA)   NCBI Sequence Viewer  
  BAE41697 (Get FASTA)   NCBI Sequence Viewer  
  EDL04473 (Get FASTA)   NCBI Sequence Viewer  
  EDL04474 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000130098
  ENSMUSP00000130098.2
  ENSMUSP00000131504
  ENSMUSP00000131504.2
  ENSMUSP00000155068.2
  ENSMUSP00000155333.2
  ENSMUSP00000155334
  ENSMUSP00000155334.2
  ENSMUSP00000155481.2
  ENSMUSP00000155845.2
  ENSMUSP00000155925.2
GenBank Protein Q9WVE8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_035992   ⟸   NM_011862
- Peptide Label: isoform 1
- UniProtKB: Q9WVE8 (UniProtKB/Swiss-Prot),   Q3TDA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001152981   ⟸   NM_001159509
- Peptide Label: isoform 1
- UniProtKB: Q9WVE8 (UniProtKB/Swiss-Prot),   Q3TDA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001152982   ⟸   NM_001159510
- Peptide Label: isoform 1
- UniProtKB: Q9WVE8 (UniProtKB/Swiss-Prot),   Q3TDA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006521044   ⟸   XM_006520981
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006521043   ⟸   XM_006520980
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006521046   ⟸   XM_006520983
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006521045   ⟸   XM_006520982
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011243935   ⟸   XM_011245633
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001345572   ⟸   NM_001358643
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001345571   ⟸   NM_001358642
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001345570   ⟸   NM_001358641
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001345573   ⟸   NM_001358644
- Peptide Label: isoform 3
Ensembl Acc Id: ENSMUSP00000155334   ⟸   ENSMUST00000231184
Ensembl Acc Id: ENSMUSP00000155925   ⟸   ENSMUST00000231946
Ensembl Acc Id: ENSMUSP00000155068   ⟸   ENSMUST00000230816
Ensembl Acc Id: ENSMUSP00000155481   ⟸   ENSMUST00000230679
Ensembl Acc Id: ENSMUSP00000155333   ⟸   ENSMUST00000230030
Ensembl Acc Id: ENSMUSP00000131504   ⟸   ENSMUST00000171436
Ensembl Acc Id: ENSMUSP00000130098   ⟸   ENSMUST00000165095
Ensembl Acc Id: ENSMUSP00000058320   ⟸   ENSMUST00000056177
Ensembl Acc Id: ENSMUSP00000155845   ⟸   ENSMUST00000229337
RefSeq Acc Id: XP_036015302   ⟸   XM_036159409
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001398781   ⟸   NM_001411852
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001398780   ⟸   NM_001411851
- Peptide Label: isoform 1
- UniProtKB: Q9WVE8 (UniProtKB/Swiss-Prot),   Q3TDA7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001398779   ⟸   NM_001411850
- Peptide Label: isoform 1
- UniProtKB: Q9WVE8 (UniProtKB/Swiss-Prot),   Q3TDA7 (UniProtKB/TrEMBL)
Protein Domains
F-BAR   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WVE8-F1-model_v2 AlphaFold Q9WVE8 1-486 view protein structure

Promoters
RGD ID:6826302
Promoter ID:MM_KWN:19252
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung
Transcripts:NM_001159510,   NM_011862
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361583,263,016 - 83,263,516 (-)MPROMDB
RGD ID:8684564
Promoter ID:EPDNEW_M20313
Type:initiation region
Name:Pacsin2_2
Description:Mus musculus protein kinase C and casein kinase substrate inneurons 2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20314  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381583,432,836 - 83,432,896EPDNEW
RGD ID:8684566
Promoter ID:EPDNEW_M20314
Type:initiation region
Name:Pacsin2_1
Description:Mus musculus protein kinase C and casein kinase substrate inneurons 2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20313  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381583,464,583 - 83,464,643EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1345153 AgrOrtholog
Ensembl Genes ENSMUSG00000016664 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000165095 ENTREZGENE
  ENSMUST00000165095.9 UniProtKB/Swiss-Prot
  ENSMUST00000171436 ENTREZGENE
  ENSMUST00000171436.8 UniProtKB/Swiss-Prot
  ENSMUST00000229337.2 UniProtKB/TrEMBL
  ENSMUST00000230030.2 UniProtKB/TrEMBL
  ENSMUST00000230679.2 UniProtKB/Swiss-Prot
  ENSMUST00000230816.2 UniProtKB/TrEMBL
  ENSMUST00000231184 ENTREZGENE
  ENSMUST00000231184.2 UniProtKB/Swiss-Prot
  ENSMUST00000231946.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 Domains UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F_BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FCH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PACSIN1/PACSIN2_SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PACSIN2_F-BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAM UniProtKB/TrEMBL
KEGG Report mmu:23970 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1345153 ENTREZGENE
NCBI Gene 23970 ENTREZGENE
PANTHER JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE UniProtKB/TrEMBL
  JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE UniProtKB/TrEMBL
  PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23065:SF14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pacsin2 PhenoGen
PRINTS SH3DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE F_BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2R8W6S4_MOUSE UniProtKB/TrEMBL
  A0A2R8W750_MOUSE UniProtKB/TrEMBL
  A0A338P6P7_MOUSE UniProtKB/TrEMBL
  PACN2_MOUSE UniProtKB/Swiss-Prot
  Q3TDA7 ENTREZGENE, UniProtKB/TrEMBL
  Q3UP40_MOUSE UniProtKB/TrEMBL
  Q8BNK9_MOUSE UniProtKB/TrEMBL
  Q9WVE8 ENTREZGENE