LSM3P3 (LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 3) - Rat Genome Database

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Gene: LSM3P3 (LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 3) Homo sapiens
Analyze
Symbol: LSM3P3
Name: LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 3
RGD ID: 6893069
HGNC Page HGNC:44348
Description: INTERACTS WITH chloropicrin
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: LSM3  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38285,101,977 - 85,102,699 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl285,102,389 - 85,102,694 (-)EnsemblGRCh38hg38GRCh38
GRCh37285,329,100 - 85,329,822 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,183,019 - 85,183,328 (-)NCBINCBI36Build 36hg18NCBI36
Celera285,157,246 - 85,158,105 (-)NCBICelera
Cytogenetic Map2p11.2NCBI
HuRef285,225,759 - 85,226,618 (-)NCBIHuRef
CHM1_1285,258,798 - 85,259,657 (-)NCBICHM1_1
T2T-CHM13v2.0285,103,861 - 85,104,583 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
chloropicrin  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:144
Count of miRNA genes:139
Interacting mature miRNAs:144
Transcripts:ENST00000436601
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
182 300 530 354 729 301 409 2 97 243 69 342 1142 961 1 573 1 156 321 296 32 1

Sequence


Ensembl Acc Id: ENST00000436601
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl285,102,389 - 85,102,694 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC LSM3P3 COSMIC
Ensembl Genes ENSG00000225787 Ensembl
GTEx ENSG00000225787 GTEx
HGNC ID HGNC:44348 ENTREZGENE
Human Proteome Map LSM3P3 Human Proteome Map
NCBI Gene LSM3P3 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-07 LSM3P3  LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 3    LSM3 U6 small nuclear RNA and mRNA degradation associated pseudogene 3  Symbol and/or name change 5135510 APPROVED
2015-06-30 LSM3P3  LSM3 U6 small nuclear RNA and mRNA degradation associated pseudogene 3    LSM3 pseudogene 3  Symbol and/or name change 5135510 APPROVED
2013-10-22 LSM3P3  LSM3 pseudogene 3    LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 3  Symbol and/or name change 5135510 APPROVED