Galnt12-ps2 (polypeptide N-acetylgalactosaminyltransferase 12, pseudogene 2) - Rat Genome Database

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Gene: Galnt12-ps2 (polypeptide N-acetylgalactosaminyltransferase 12, pseudogene 2) Rattus norvegicus
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Symbol: Galnt12-ps2
Name: polypeptide N-acetylgalactosaminyltransferase 12, pseudogene 2
RGD ID: 6494161
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC100911198; LOC689006; polypeptide N-acetylgalactosaminyltransferase 12-like; similar to UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81520,525,978 - 20,527,915 (+)NCBIGRCr8
mRatBN7.21518,046,210 - 18,048,369 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0155,117,646 - 5,119,572 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0159,203,091 - 9,205,028 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41520,649,942 - 20,651,540 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1518,475,184 - 18,477,121 (+)NCBICelera
Cytogenetic Map15p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Galnt12-ps2
126 total Variants

1 to 10 of 19 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat

1 to 10 of 19 rows





GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-14236 BioCyc
NCBI Gene LOC100911198 ENTREZGENE
PhenoGen Galnt12-ps2 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Galnt12-ps2  polypeptide N-acetylgalactosaminyltransferase 12, pseudogene 2  LOC100911198  polypeptide N-acetylgalactosaminyltransferase 12-like  Symbol and Name Changed 1299863 APPROVED
2015-07-29 LOC100911198  polypeptide N-acetylgalactosaminyltransferase 12-like  LOC689006  similar to UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12  Data merged from RGD:1597480 737654 PROVISIONAL
2012-07-05 LOC100911198  polypeptide N-acetylgalactosaminyltransferase 12-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC689006  similar to UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12      Symbol and Name status set to provisional 70820 PROVISIONAL