RNA5SP52 (RNA, 5S ribosomal pseudogene 52) - Rat Genome Database

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Gene: RNA5SP52 (RNA, 5S ribosomal pseudogene 52) Homo sapiens
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Symbol: RNA5SP52
Name: RNA, 5S ribosomal pseudogene 52
RGD ID: 6482085
HGNC Page HGNC:42829
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S52
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38187,453,240 - 87,453,373 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl187,453,240 - 87,453,373 (-)EnsemblGRCh38hg38GRCh38
GRCh37187,918,923 - 87,919,056 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p22.3NCBI
CHM1_1188,033,799 - 88,033,932 (-)NCBICHM1_1
T2T-CHM13v2.0187,296,455 - 87,296,588 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model




.

Predicted Target Of
Summary Value
Count of predictions:71
Count of miRNA genes:71
Interacting mature miRNAs:71
Transcripts:ENST00000362448
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2316890GLUCO302_HGlucose level QTL 302 (human)0.005Glucose level16853299294532992Human
2289499BW445_HBody weight QTL 445 (human)2.26Body morphometrywaist to hip ratio16853299294532992Human
1581539BP75_HBlood pressure QTL 75 (human)2.40.001Blood pressurepulse pressure16853299294532992Human
2292793PRSTS24_HProstate tumor susceptibility QTL 24 (human)Prostate tumor susceptibilitylate onset16853299294532992Human
1559226SLEP4_HSerum leptin concentration QTL 4 (human)3.4Hormone levelleptin181532913107532913Human




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
193 146 296 228 335 76 204 1 31 166 16 303 559 662 2 222 75 125 171 15


RefSeq Transcripts NG_033383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC104838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000362448
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl187,453,240 - 87,453,373 (-)Ensembl


Database
Acc Id
Source(s)
COSMIC RNA5SP52 COSMIC
Ensembl Genes ENSG00000199318 Ensembl, ENTREZGENE
GTEx ENSG00000199318 GTEx
HGNC ID HGNC:42829 ENTREZGENE
Human Proteome Map RNA5SP52 Human Proteome Map
NCBI Gene RN5S52 ENTREZGENE


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP52  RNA, 5S ribosomal pseudogene 52  RN5S52  RNA, 5S ribosomal 52  Symbol and/or name change 5135510 APPROVED