RNA5SP115 (RNA, 5S ribosomal pseudogene 115) - Rat Genome Database

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Gene: RNA5SP115 (RNA, 5S ribosomal pseudogene 115) Homo sapiens
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Symbol: RNA5SP115
Name: RNA, 5S ribosomal pseudogene 115
RGD ID: 6481950
HGNC Page HGNC:42913
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S115
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382200,849,038 - 200,849,144 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2200,849,038 - 200,849,144 (-)EnsemblGRCh38hg38GRCh38
GRCh372201,713,761 - 201,713,867 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q33.1NCBI
HuRef2193,565,174 - 193,565,280 (-)NCBIHuRef
CHM1_12201,719,754 - 201,719,860 (-)NCBICHM1_1
T2T-CHM13v2.02201,332,490 - 201,332,596 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:32513696  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:110
Interacting mature miRNAs:111
Transcripts:ENST00000411160
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293458PRSTS291_HProstate tumor susceptibility QTL 291 (human)0.012Prostate tumor susceptibility2200715236226715236Human
1643053BW117_HBody Weight QTL 117 (human)2.40.00044Body weight2200715236226715236Human
1643254BW125_HBody Weight QTL 125 (human)1.450.005Body weightbody mass index2200715236226715236Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
33 71 72 36 128 35 95 1 23 161 18 57 286 247 16 108 26 85 70 8

Sequence


Ensembl Acc Id: ENST00000411160
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2200,849,038 - 200,849,144 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP115 COSMIC
Ensembl Genes ENSG00000223092 Ensembl, ENTREZGENE
GTEx ENSG00000223092 GTEx
HGNC ID HGNC:42913 ENTREZGENE
Human Proteome Map RNA5SP115 Human Proteome Map
NCBI Gene RN5S115 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP115  RNA, 5S ribosomal pseudogene 115  RN5S115  RNA, 5S ribosomal 115  Symbol and/or name change 5135510 APPROVED