RNA5SP177 (RNA, 5S ribosomal pseudogene 177) - Rat Genome Database

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Gene: RNA5SP177 (RNA, 5S ribosomal pseudogene 177) Homo sapiens
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Symbol: RNA5SP177
Name: RNA, 5S ribosomal pseudogene 177
RGD ID: 6481904
HGNC Page HGNC:43077
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S177
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3859,760,907 - 9,761,013 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl59,760,907 - 9,761,013 (+)EnsemblGRCh38hg38GRCh38
GRCh3759,761,019 - 9,761,125 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5p15.31NCBI
CHM1_159,760,963 - 9,761,069 (+)NCBICHM1_1
T2T-CHM13v2.059,700,681 - 9,700,787 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:72
Count of miRNA genes:71
Interacting mature miRNAs:72
Transcripts:ENST00000410122
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
5 8 17 10 39 9 10 3 13 2 17 37 35 1 33 6 81 8 1

Sequence


Ensembl Acc Id: ENST00000410122
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl59,760,907 - 9,761,013 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP177 COSMIC
Ensembl Genes ENSG00000222054 Ensembl, ENTREZGENE
GTEx ENSG00000222054 GTEx
HGNC ID HGNC:43077 ENTREZGENE
Human Proteome Map RNA5SP177 Human Proteome Map
NCBI Gene RN5S177 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP177  RNA, 5S ribosomal pseudogene 177  RN5S177  RNA, 5S ribosomal 177  Symbol and/or name change 5135510 APPROVED