HMGN1P9 (high mobility group nucleosome binding domain 1 pseudogene) - Rat Genome Database

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Gene: HMGN1P9 (high mobility group nucleosome binding domain 1 pseudogene) Homo sapiens
Analyze
Symbol: HMGN1P9
Name: high mobility group nucleosome binding domain 1 pseudogene
RGD ID: 6481000
HGNC Page HGNC:39352
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: HMGN1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383134,385,197 - 134,385,494 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3134,385,197 - 134,385,494 (+)EnsemblGRCh38hg38GRCh38
GRCh373134,104,039 - 134,104,336 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q22.2NCBI
HuRef3131,481,871 - 131,482,168 (+)NCBIHuRef
CHM1_13134,068,117 - 134,068,414 (+)NCBICHM1_1
T2T-CHM13v2.03137,130,352 - 137,130,649 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:150
Count of miRNA genes:149
Interacting mature miRNAs:150
Transcripts:ENST00000515212
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 39 106 26 18 3 20 504 11 162 23 84 41 2 205 299
Below cutoff 262 409 232 145 38 124 1124 170 367 93 309 208 23 385 703 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000515212
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3134,385,197 - 134,385,494 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HMGN1P9 COSMIC
Ensembl Genes ENSG00000248377 Ensembl, ENTREZGENE
GTEx ENSG00000248377 GTEx
HGNC ID HGNC:39352 ENTREZGENE
Human Proteome Map HMGN1P9 Human Proteome Map
NCBI Gene HMGN1P9 ENTREZGENE