Atp5me (ATP synthase membrane subunit e) - Rat Genome Database

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Gene: Atp5me (ATP synthase membrane subunit e) Rattus norvegicus
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Symbol: Atp5me
Name: ATP synthase membrane subunit e
RGD ID: 621377
Description: Predicted to enable proton transmembrane transporter activity. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Involved in ATP metabolic process. Located in mitochondrion. Part of mitochondrial proton-transporting ATP synthase complex, coupling factor F(o). Orthologous to human ATP5ME (ATP synthase membrane subunit e); PARTICIPATES IN oxidative phosphorylation pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; Actein.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATP synthase subunit e, mitochondrial; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit E; ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e; ATP synthase, H+ transporting, mitochondrial Fo complex, subunit E; Atp5i; Atp5k; ATPase subunit e
RGD Orthologs
Human
Mouse
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2141,319,868 - 1,320,996 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl141,319,868 - 1,321,013 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx141,201,597 - 1,202,725 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0142,503,354 - 2,504,482 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0141,200,028 - 1,201,156 (+)NCBIRnor_WKY
Rnor_6.0142,325,308 - 2,326,436 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,325,308 - 2,326,436 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0142,323,662 - 2,324,790 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4141,867,344 - 1,868,472 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1141,867,343 - 1,868,472 (+)NCBI
Celera141,341,753 - 1,342,881 (+)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
5-Hydroxythalidomide  (ISO)
Actein  (EXP)
aflatoxin B1  (ISO)
ammonium chloride  (EXP)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzene  (EXP)
bicalutamide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bleomycin A2  (ISO)
carbon nanotube  (ISO)
cisplatin  (EXP,ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
etoposide  (ISO)
flutamide  (ISO)
folic acid  (ISO)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
isoprenaline  (EXP)
ivermectin  (ISO)
lithium chloride  (ISO)
methidathion  (ISO)
methylmercury chloride  (ISO)
nitrofen  (EXP)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
phenethyl isothiocyanate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
resveratrol  (ISO)
rimonabant  (ISO)
rotenone  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulforaphane  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
tolcapone  (EXP)
toluene  (EXP)
Tributyltin oxide  (EXP)
trichloroethene  (EXP)
Triptolide  (EXP)
trovafloxacin  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Complete amino acid sequence of subunit e of rat liver mitochondrial H(+)-ATP synthase. Higuti T, etal., Biochemistry 1992 Dec 15;31(49):12451-4.
3. A simple, rapid method for purification of epsilon-subunit, coupling factor 6, subunit d, and subunit e from rat liver H(+)-ATP synthase and determination of the complete amino acid sequence of epsilon-subunit. Higuti T, etal., J Biol Chem. 1992 Nov 5;267(31):22658-61.
4. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
5. Mitochondrial F(0)F(1) ATP synthase. Subunit regions on the F1 motor shielded by F(0), Functional significance, and evidence for an involvement of the unique F(0) subunit F(6). Ko YH, etal., J Biol Chem. 2000 Oct 20;275(42):32931-9.
6. Identification of two proteins associated with mammalian ATP synthase. Meyer B, etal., Mol Cell Proteomics. 2007 Oct;6(10):1690-9. Epub 2007 Jun 17.
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:12110673   PMID:15489334   PMID:18614015   PMID:29476059  


Genomics

Comparative Map Data
Atp5me
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2141,319,868 - 1,320,996 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl141,319,868 - 1,321,013 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx141,201,597 - 1,202,725 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0142,503,354 - 2,504,482 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0141,200,028 - 1,201,156 (+)NCBIRnor_WKY
Rnor_6.0142,325,308 - 2,326,436 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,325,308 - 2,326,436 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0142,323,662 - 2,324,790 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4141,867,344 - 1,868,472 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1141,867,343 - 1,868,472 (+)NCBI
Celera141,341,753 - 1,342,881 (+)NCBICelera
Cytogenetic Map14p22NCBI
ATP5ME
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384672,436 - 674,276 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl4672,436 - 674,330 (-)EnsemblGRCh38hg38GRCh38
GRCh374666,225 - 668,065 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364656,225 - 658,122 (-)NCBINCBI36Build 36hg18NCBI36
Build 344656,225 - 658,122NCBI
Celera4606,912 - 634,112 (-)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef4641,076 - 642,978 (-)NCBIHuRef
CHM1_14666,013 - 667,915 (-)NCBICHM1_1
T2T-CHM13v2.04672,110 - 673,950 (-)NCBIT2T-CHM13v2.0
Atp5k
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395108,581,112 - 108,582,265 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5108,581,110 - 108,582,314 (-)EnsemblGRCm39 Ensembl
GRCm385108,433,246 - 108,434,399 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5108,433,244 - 108,434,448 (-)EnsemblGRCm38mm10GRCm38
MGSCv375108,862,272 - 108,863,397 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365108,673,555 - 108,674,680 (-)NCBIMGSCv36mm8
Celera5105,553,187 - 105,554,312 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.11NCBI
Atp5me
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540411,420,964 - 11,421,171 (-)NCBIChiLan1.0ChiLan1.0
ATP5ME
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X108,285,208 - 108,285,423 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX94,112,808 - 94,113,023 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X110,272,147 - 110,272,362 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX110,272,147 - 110,272,362 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X107,406,027 - 107,406,242 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X109,593,530 - 109,593,745 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X109,239,950 - 109,240,165 (-)NCBIUU_Cfam_GSD_1.0
Atp5me
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528568,714,793 - 68,715,851 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647722,416,539 - 22,417,543 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493647722,416,505 - 22,417,543 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP5ME
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8110,605 - 113,510 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18112,092 - 113,526 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28150,077 - 151,476 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP5ME
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12748,114,033 - 48,115,963 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2748,113,477 - 48,115,896 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660514,500,187 - 4,502,153 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp5me
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475526,368,755 - 26,369,665 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475526,368,644 - 26,369,719 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp5me
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:17
Count of miRNA genes:16
Interacting mature miRNAs:17
Transcripts:ENSRNOT00000000072
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14121760611030812Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14121760616960180Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 15 1 3 2 1
Medium 3 28 57 41 19 41 7 8 74 33 41 11 7
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000000072   ⟹   ENSRNOP00000000072
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl141,319,868 - 1,321,013 (+)Ensembl
Rnor_6.0 Ensembl142,325,308 - 2,326,436 (+)Ensembl
RefSeq Acc Id: NM_080481   ⟹   NP_536729
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2141,319,868 - 1,320,996 (+)NCBI
Rnor_6.0142,325,308 - 2,326,436 (+)NCBI
Rnor_5.0142,323,662 - 2,324,790 (+)NCBI
RGSC_v3.4141,867,344 - 1,868,472 (+)RGD
Celera141,341,753 - 1,342,881 (+)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: NP_536729   ⟸   NM_080481
- UniProtKB: P29419 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000000072   ⟸   ENSRNOT00000000072

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P29419-F1-model_v2 AlphaFold P29419 1-71 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699151
Promoter ID:EPDNEW_R9675
Type:multiple initiation site
Name:Atp5i_1
Description:ATP synthase, H+ transporting, mitochondrial Fo complex, subunitE
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0142,325,300 - 2,325,360EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621377 AgrOrtholog
BioCyc Gene G2FUF-16675 BioCyc
BioCyc Pathway PWY-7980 [ATP biosynthesis] BioCyc
Ensembl Genes ENSRNOG00000000064 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000000072.3 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000072.3 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6890563 IMAGE-MGC_LOAD
InterPro ATP_synth_F0_esu_mt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:140608 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72719 IMAGE-MGC_LOAD
NCBI Gene 140608 ENTREZGENE
PANTHER PTHR12427 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ATP-synt_E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atp5me PhenoGen
UniProt A0A8L2UH34_RAT UniProtKB/TrEMBL
  ATP5I_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-01-10 Atp5me  ATP synthase membrane subunit e  Atp5i  ATP synthase, H+ transporting, mitochondrial Fo complex, subunit E  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-12-01 Atp5i  ATP synthase, H+ transporting, mitochondrial Fo complex, subunit E  Atp5i  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit E  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-06-27 Atp5i  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit E  Atp5i  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit e  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Atp5i  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit e  Atp5k  ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e  Symbol and Name updated 1299863 APPROVED
2002-08-07 Atp5k  ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contains a Ca(2+)-dependent tropomyosin-binding domain homologous to that of troponin T 632028
gene_expression purified from liver 632028
gene_protein isoelectric point of subunit e is 9.78 632028
gene_protein 70 amino acids 632028