PCNAP3 (proliferating cell nuclear antigen pseudogene 3) - Rat Genome Database

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Gene: PCNAP3 (proliferating cell nuclear antigen pseudogene 3) Homo sapiens
Analyze
Symbol: PCNAP3
Name: proliferating cell nuclear antigen pseudogene 3
RGD ID: 5688492
HGNC Page HGNC:43736
Description: INTERACTS WITH benzo[a]pyrene diol epoxide I
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: PCNA  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X46,058,552 - 46,059,657 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX46,058,751 - 46,059,528 (-)EnsemblGRCh38hg38GRCh38
GRCh37X45,917,987 - 45,919,092 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X45,803,125 - 45,803,907 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX50,110,102 - 50,110,878 (-)NCBICelera
Cytogenetic MapXp11.3NCBI
HuRefX43,632,751 - 43,633,527 (-)NCBIHuRef
CHM1_1X45,950,611 - 45,951,387 (-)NCBICHM1_1
T2T-CHM13v2.0X45,465,959 - 45,467,064 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22309575  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:108
Count of miRNA genes:106
Interacting mature miRNAs:108
Transcripts:ENST00000397222
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH68739  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37205,095,639 - 5,095,873UniSTSGRCh37
GRCh37X45,917,891 - 45,918,125UniSTSGRCh37
Build 36X45,802,835 - 45,803,069RGDNCBI36
Celera205,165,660 - 5,165,894UniSTS
CeleraX50,109,806 - 50,110,040RGD
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map20pter-p12UniSTS
HuRef205,049,574 - 5,049,808UniSTS
HuRefX43,632,455 - 43,632,689UniSTS
RH80338  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37205,095,651 - 5,095,853UniSTSGRCh37
GRCh37X45,917,903 - 45,918,105UniSTSGRCh37
Build 36X45,802,847 - 45,803,049RGDNCBI36
Celera205,165,672 - 5,165,874UniSTS
CeleraX50,109,818 - 50,110,020RGD
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map20pter-p12UniSTS
HuRef205,049,586 - 5,049,788UniSTS
HuRefX43,632,467 - 43,632,669UniSTS
G43531  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37205,095,648 - 5,095,854UniSTSGRCh37
GRCh37X45,917,900 - 45,918,106UniSTSGRCh37
Build 36X45,802,844 - 45,803,050RGDNCBI36
Celera205,165,669 - 5,165,875UniSTS
CeleraX50,109,815 - 50,110,021RGD
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map20pter-p12UniSTS
HuRef205,049,583 - 5,049,789UniSTS
HuRefX43,632,464 - 43,632,670UniSTS
GDB:450240  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37205,095,939 - 5,096,179UniSTSGRCh37
GRCh37X45,918,191 - 45,918,345UniSTSGRCh37
Build 36X45,803,135 - 45,803,289RGDNCBI36
Celera205,165,960 - 5,166,200UniSTS
CeleraX50,110,106 - 50,110,260RGD
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map20pter-p12UniSTS
HuRef205,049,874 - 5,050,114UniSTS
HuRefX43,632,755 - 43,632,909UniSTS
RH78927  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37205,095,652 - 5,095,888UniSTSGRCh37
GRCh37X45,917,904 - 45,918,140UniSTSGRCh37
Build 36X45,802,848 - 45,803,084RGDNCBI36
CeleraX50,109,819 - 50,110,055RGD
Celera205,165,673 - 5,165,909UniSTS
Cytogenetic Map20pter-p12UniSTS
Cytogenetic MapXp11.3UniSTS
HuRefX43,632,468 - 43,632,704UniSTS
HuRef205,049,587 - 5,049,823UniSTS
GeneMap99-GB4 RH Map2028.85UniSTS
NCBI RH Map2040.4UniSTS
STS-M15796  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37205,095,849 - 5,096,129UniSTSGRCh37
GRCh37X45,918,101 - 45,918,295UniSTSGRCh37
Build 36X45,803,045 - 45,803,239RGDNCBI36
CeleraX50,110,016 - 50,110,210RGD
Celera205,165,870 - 5,166,150UniSTS
Cytogenetic Map20pter-p12UniSTS
Cytogenetic MapXp11.3UniSTS
HuRefX43,632,665 - 43,632,859UniSTS
HuRef205,049,784 - 5,050,064UniSTS
GeneMap99-GB4 RH MapX135.51UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
63 118 145 95 276 80 111 23 78 15 125 318 288 9 196 25 97 88 11 1

Sequence


Ensembl Acc Id: ENST00000397222
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX46,058,751 - 46,059,528 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PCNAP3 COSMIC
Ensembl Genes ENSG00000214009 Ensembl
GTEx ENSG00000214009 GTEx
HGNC ID HGNC:43736 ENTREZGENE
Human Proteome Map PCNAP3 Human Proteome Map
NCBI Gene PCNAP3 ENTREZGENE