6330418K02Rik (RIKEN cDNA 6330418K02 gene) - Rat Genome Database

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Gene: 6330418K02Rik (RIKEN cDNA 6330418K02 gene) Mus musculus
Analyze
Symbol: 6330418K02Rik
Name: RIKEN cDNA 6330418K02 gene
RGD ID: 5685438
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395138,262,307 - 138,264,923 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5138,262,300 - 138,264,929 (+)EnsemblGRCm39 Ensembl
GRCm385138,264,045 - 138,266,661 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5138,264,043 - 138,266,661 (+)EnsemblGRCm38mm10GRCm38
Celera5135,246,897 - 135,249,513 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map577.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
6330418K02RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
6330418K02RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
6330418K02RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693  



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Variants in 6330418K02Rik
128 total Variants

Predicted Target Of
Summary Value
Count of predictions:666
Count of miRNA genes:393
Interacting mature miRNAs:441
Transcripts:ENSMUST00000124298, ENSMUST00000125662, ENSMUST00000138911, ENSMUST00000141454, ENSMUST00000144460
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 27 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
1301715Elmaz2_melevated maze behavior 2 (mouse)Not determined5125178229141700466Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
13464143Bbaa2b_mB.burgdorferi-associated arthritis 2b (mouse)5133052969140709801Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129787831151758149Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129520084151758149Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse

1 to 10 of 27 rows






Ensembl Acc Id: ENSMUST00000124298
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,262,303 - 138,264,926 (+)Ensembl
GRCm38.p6 Ensembl5138,264,043 - 138,266,661 (+)Ensembl
Ensembl Acc Id: ENSMUST00000125662
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,262,314 - 138,264,926 (+)Ensembl
GRCm38.p6 Ensembl5138,264,069 - 138,266,661 (+)Ensembl
Ensembl Acc Id: ENSMUST00000138911
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,263,806 - 138,264,345 (+)Ensembl
GRCm38.p6 Ensembl5138,265,544 - 138,266,083 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141454
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,262,300 - 138,264,926 (+)Ensembl
GRCm38.p6 Ensembl5138,264,054 - 138,266,332 (+)Ensembl
Ensembl Acc Id: ENSMUST00000144460
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,262,322 - 138,264,923 (+)Ensembl
GRCm38.p6 Ensembl5138,264,108 - 138,266,229 (+)Ensembl
Ensembl Acc Id: ENSMUST00000289034
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,262,321 - 138,264,929 (+)Ensembl
Ensembl Acc Id: ENSMUST00000289035
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,262,333 - 138,264,924 (+)Ensembl
Ensembl Acc Id: ENSMUST00000289036
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,262,343 - 138,264,923 (+)Ensembl
Ensembl Acc Id: ENSMUST00000289037
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,262,347 - 138,264,920 (+)Ensembl
Ensembl Acc Id: ENSMUST00000289038
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,262,361 - 138,264,923 (+)Ensembl
Ensembl Acc Id: ENSMUST00000289039
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,262,547 - 138,264,920 (+)Ensembl
Ensembl Acc Id: ENSMUST00000289040
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,262,333 - 138,262,953 (+)Ensembl
RefSeq Acc Id: NR_045821
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395138,262,307 - 138,264,923 (+)NCBI
GRCm385138,264,045 - 138,266,661 (+)ENTREZGENE
Celera5135,246,897 - 135,249,513 (+)ENTREZGENE
cM Map5 ENTREZGENE
Sequence:
RGD ID:15092994
Promoter ID:EPDNEWNC_M894
Type:multiple initiation site
Name:6330418K02Rik_1
Description:RIKEN cDNA 6330418K02 gene [Source:MGISymbol;Acc:MGI:3697416]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385138,264,069 - 138,264,129EPDNEWNC


1 to 11 of 11 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000085227 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000124298 ENTREZGENE
MGD MGI:3697416 ENTREZGENE
NCBI Gene 6330418K02Rik ENTREZGENE
PhenoGen 6330418K02Rik PhenoGen
RNAcentral URS000075E521 RNACentral
  URS0000811C6C RNACentral
  URS0000811D73 RNACentral
  URS00025EF723 RNACentral
  URS00025F0211 RNACentral
  URS00025F032A RNACentral
1 to 11 of 11 rows