1700024B05Rik (RIKEN cDNA 1700024B05 gene) - Rat Genome Database

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Gene: 1700024B05Rik (RIKEN cDNA 1700024B05 gene) Mus musculus
Analyze
Symbol: 1700024B05Rik
Name: RIKEN cDNA 1700024B05 gene
RGD ID: 5684494
MGI Page MGI
Description:
Type: gene (Ensembl: protein-coding)
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391441,765,941 - 41,825,778 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1441,765,952 - 41,825,778 (+)EnsemblGRCm39 Ensembl
GRCm381441,943,984 - 42,003,821 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1441,943,995 - 42,003,821 (+)EnsemblGRCm38mm10GRCm38
MGSCv371440,618,226 - 40,678,050 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map14BNCBI
cM Map1422.39NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
1700024B05RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
1700024B05RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
1700024B05RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068  



.

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Variants in 1700024B05Rik
29 total Variants

Predicted Target Of
Summary Value
Count of predictions:384
Count of miRNA genes:170
Interacting mature miRNAs:178
Transcripts:ENSMUST00000064162, ENSMUST00000168972
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 22 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse

1 to 10 of 22 rows
D14Mit80  
Mouse AssemblyChrPosition (strand)SourceJBrowse
cM Map1413.5UniSTS
cM Map14 UniSTS
Whitehead Genetic1420.8UniSTS
Whitehead_YAC14 UniSTS







Ensembl Acc Id: ENSMUST00000064162   ⟹   ENSMUSP00000064211
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1441,765,952 - 41,825,778 (+)Ensembl
GRCm38.p6 Ensembl1441,943,995 - 42,003,821 (+)Ensembl
Ensembl Acc Id: ENSMUST00000168972   ⟹   ENSMUSP00000127922
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1441,765,952 - 41,825,776 (+)Ensembl
GRCm38.p6 Ensembl1441,943,995 - 42,003,819 (+)Ensembl
RefSeq Acc Id: NM_029322   ⟹   NP_083598
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv371440,618,226 - 40,678,050 (+)NCBI
Protein RefSeqs NP_083598 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB24510 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000064211.5
Ensembl Acc Id: ENSMUSP00000127922   ⟸   ENSMUST00000168972
Ensembl Acc Id: ENSMUSP00000064211   ⟸   ENSMUST00000064162
RefSeq Acc Id: NP_083598   ⟸   NM_029322
Disks large homolog 5 N-terminal

Name Modeler Protein Id AA Range Protein Structure
AF-E9Q6D7-F1-model_v2 AlphaFold E9Q6D7 1-167 view protein structure



1 to 11 of 11 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000052334 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000064162.11 UniProtKB/TrEMBL
InterPro DUF622 UniProtKB/TrEMBL
MGD MGI:1922768 ENTREZGENE
NCBI Gene 1700024B05Rik ENTREZGENE
PANTHER 2610042L04RIK PROTEIN-RELATED UniProtKB/TrEMBL
  SPEER/SPETEX UniProtKB/TrEMBL
Pfam DUF622 UniProtKB/TrEMBL
PhenoGen 1700024B05Rik PhenoGen
UniProt E9Q6D7_MOUSE UniProtKB/TrEMBL
  Q9DA05_MOUSE UniProtKB/TrEMBL
1 to 11 of 11 rows