USP32P1 (ubiquitin specific peptidase 32 pseudogene 1) - Rat Genome Database

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Gene: USP32P1 (ubiquitin specific peptidase 32 pseudogene 1) Homo sapiens
Analyze
Symbol: USP32P1
Name: ubiquitin specific peptidase 32 pseudogene 1
RGD ID: 5552925
HGNC Page HGNC:43570
Description: INTERACTS WITH acrylamide; arsenite(3-); benzo[a]pyrene
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: FLJ18738
Related Functional Gene: USP6  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381716,786,892 - 16,804,505 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1716,796,043 - 16,802,427 (+)EnsemblGRCh38hg38GRCh38
GRCh371716,690,206 - 16,707,819 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17p11.2NCBI
CHM1_11716,699,887 - 16,717,534 (+)NCBICHM1_1
T2T-CHM13v2.01716,689,602 - 16,707,200 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11997339   PMID:12477932   PMID:16344560  


Genomics

Variants

.
Variants in USP32P1
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1933
Count of miRNA genes:804
Interacting mature miRNAs:945
Transcripts:ENST00000341745, ENST00000393005, ENST00000417524, ENST00000437217, ENST00000444558, ENST00000445583, ENST00000456071, ENST00000506594, ENST00000577603, ENST00000578986, ENST00000582011
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH119377  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371720,334,128 - 20,334,415UniSTSGRCh37
GRCh371716,705,550 - 16,705,836UniSTSGRCh37
Build 361716,646,275 - 16,646,561RGDNCBI36
Cytogenetic Map17p11.1UniSTS
Cytogenetic Map17p11.2UniSTS
TNG Radiation Hybrid Map179385.0UniSTS
D17S1980  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17p13UniSTS
Cytogenetic Map17p11.2UniSTS
TNG Radiation Hybrid Map179287.0UniSTS
GeneMap99-G3 RH Map17930.0UniSTS
SHGC-57390  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17p13UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map17q23.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 879 715 466 39 176 1 1295 468 1555 21 718 533 38 494 848
Low 1015 1600 682 258 774 162 1982 1175 2031 160 323 584 100 468 1402 4
Below cutoff 449 647 413 179 755 155 1058 545 114 189 336 432 32 241 535

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000341745
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,798,009 - 16,804,455 (+)Ensembl
RefSeq Acc Id: ENST00000393005
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,786,990 - 16,804,455 (+)Ensembl
RefSeq Acc Id: ENST00000417524
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,786,489 - 16,798,429 (+)Ensembl
RefSeq Acc Id: ENST00000437217
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,794,594 - 16,798,522 (+)Ensembl
RefSeq Acc Id: ENST00000444558
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,794,466 - 16,801,643 (+)Ensembl
RefSeq Acc Id: ENST00000445583
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,787,759 - 16,801,126 (+)Ensembl
RefSeq Acc Id: ENST00000456071
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,791,977 - 16,800,128 (+)Ensembl
RefSeq Acc Id: ENST00000506594
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,796,043 - 16,802,427 (+)Ensembl
RefSeq Acc Id: ENST00000577603
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,791,663 - 16,796,204 (+)Ensembl
RefSeq Acc Id: ENST00000578986
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,786,704 - 16,796,152 (+)Ensembl
RefSeq Acc Id: ENST00000582011
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,794,535 - 16,798,520 (+)Ensembl
RefSeq Acc Id: NR_003190
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381716,786,892 - 16,804,505 (+)NCBI
GRCh371716,690,206 - 16,707,819 (+)ENTREZGENE
CHM1_11716,699,887 - 16,717,534 (+)NCBI
T2T-CHM13v2.01716,689,602 - 16,707,200 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein AAQ72371 (Get FASTA)   NCBI Sequence Viewer  
  BAG64102 (Get FASTA)   NCBI Sequence Viewer  
  BAH14837 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC USP32P1 COSMIC
Ensembl Genes ENSG00000188933 Ensembl
  ENSG00000290976 ENTREZGENE
Ensembl Transcript ENST00000393005 ENTREZGENE
GTEx ENSG00000188933 GTEx
  ENSG00000290976 GTEx
HGNC ID HGNC:43570 ENTREZGENE
Human Proteome Map USP32P1 Human Proteome Map
NCBI Gene 162632 ENTREZGENE