Pitpnm2os2 (phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 2) - Rat Genome Database

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Gene: Pitpnm2os2 (phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 2) Mus musculus
Analyze
Symbol: Pitpnm2os2
Name: phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 2
RGD ID: 5147307
MGI Page MGI
Description: INTERACTS WITH bisphenol A
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: Gm16338; Gm34166; predicted gene, 34166
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,332,963 - 124,338,409 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,332,958 - 124,338,409 (+)EnsemblGRCm39 Ensembl
GRCm385124,194,900 - 124,200,346 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5124,194,907 - 124,200,346 (+)EnsemblGRCm38mm10GRCm38
MGSCv375124,644,916 - 124,648,109 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera5121,269,891 - 121,273,086 (+)NCBICelera
Cytogenetic Map5FNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:12466851   PMID:24316575  


Genomics

Variants

.
Variants in Pitpnm2os2
270 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:286
Count of miRNA genes:243
Interacting mature miRNAs:261
Transcripts:ENSMUST00000159053, ENSMUST00000162577
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357662Lprq4_mlipoprotein QTL 4 (mouse)Not determined5114021753129632606Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108762509126882944Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000159053
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5124,332,970 - 124,333,890 (+)Ensembl
GRCm38.p6 Ensembl5124,194,907 - 124,195,827 (+)Ensembl
Ensembl Acc Id: ENSMUST00000162577
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5124,333,023 - 124,338,409 (+)Ensembl
GRCm38.p6 Ensembl5124,194,960 - 124,200,346 (+)Ensembl
Ensembl Acc Id: ENSMUST00000198466
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5124,333,705 - 124,336,171 (+)Ensembl
GRCm38.p6 Ensembl5124,195,642 - 124,198,108 (+)Ensembl
Ensembl Acc Id: ENSMUST00000359758
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5124,332,958 - 124,337,179 (+)Ensembl
RefSeq Acc Id: NR_165287
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,332,963 - 124,336,163 (+)NCBI
Sequence:
RefSeq Acc Id: NR_165288
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,332,963 - 124,338,409 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000089842 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000162577 ENTREZGENE
MGD MGI:3840147 ENTREZGENE
NCBI Gene Pitpnm2os2 ENTREZGENE
PhenoGen Pitpnm2os2 PhenoGen
RNAcentral URS00007638FA RNACentral
  URS000078867D RNACentral
  URS0000811CCA RNACentral
  URS0001981140 RNACentral
  URS0001981250 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Pitpnm2os2  phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 2  Gm34166  predicted gene, 34166  Symbol and/or name change 5135510 APPROVED
2024-08-21 Gm34166  predicted gene, 34166  Pitpnm2os2  phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 2  Symbol and/or name change 5135510 APPROVED
2020-01-16 Pitpnm2os2  phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 2  Gm34166  predicted gene, 34166  Data merged from RGD:9649395 737654 PROVISIONAL
2013-11-26 Pitpnm2os2  phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 2    Pitpnm2 opposite strand transcript 2  Symbol and/or name change 5135510 APPROVED
2013-11-19 Pitpnm2os2  Pitpnm2 opposite strand transcript 2  Gm16338  predicted gene 16338  Symbol and/or name change 5135510 APPROVED