Zfp36l1-ps (zinc finger protein 36, C3H type-like 1, pseudogene) - Rat Genome Database

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Gene: Zfp36l1-ps (zinc finger protein 36, C3H type-like 1, pseudogene) Mus musculus
Analyze
Symbol: Zfp36l1-ps
Name: zinc finger protein 36, C3H type-like 1, pseudogene
RGD ID: 5146961
MGI Page MGI
Description: INTERACTS WITH all-trans-retinoic acid; mono(2-ethylhexyl) phthalate
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: Gm14556
Related Functional Gene: Zfp36l1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X37,269,486 - 37,270,700 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX37,269,605 - 37,270,503 (+)EnsemblGRCm39 Ensembl
GRCm38X38,180,609 - 38,181,823 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX38,180,728 - 38,181,626 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X35,533,786 - 35,534,800 (+)NCBIGRCm37MGSCv37mm9NCBIm37
CeleraX25,826,187 - 25,827,201 (+)NCBICelera
Cytogenetic MapXA3.3NCBI
cM MapX22.44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:245
Count of miRNA genes:212
Interacting mature miRNAs:227
Transcripts:ENSMUST00000118349
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
12738418Lfibq12_mliver fibrosis QTL 12 (mouse)X2572817443635700Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3333746355845360Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3466365356845360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
1558721Bw1_mbody weight QTL 1 (mouse)Not determinedX2060678347179225Mouse
1301551Spha1_msperm head anomaly 1 (mouse)Not determinedX1026622539921652Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_018035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL512346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000118349
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX37,269,605 - 37,270,503 (+)Ensembl
GRCm38.p6 EnsemblX38,180,728 - 38,181,626 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000080942 Ensembl
MGD MGI:3707318 ENTREZGENE
NCBI Gene 100417737 ENTREZGENE
PhenoGen Zfp36l1-ps PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-10-21 Zfp36l1-ps  zinc finger protein 36, C3H type-like 1, pseudogene  Gm14556  predicted gene 14556  Symbol and/or name change 5135510 APPROVED