Gm16244 (predicted gene 16244) - Rat Genome Database

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Gene: Gm16244 (predicted gene 16244) Mus musculus
Analyze
Symbol: Gm16244
Name: predicted gene 16244
RGD ID: 5146565
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391942,767,471 - 42,769,887 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1942,767,471 - 42,771,878 (+)EnsemblGRCm39 Ensembl
GRCm381942,779,032 - 42,781,574 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1942,779,032 - 42,781,454 (+)EnsemblGRCm38mm10GRCm38
MGSCv371942,853,522 - 42,856,064 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map19C3NCBI
cM Map1936.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm16244Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm16244Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm16244Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  



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Variants in Gm16244
95 total Variants

Predicted Target Of
Summary Value
Count of predictions:162
Count of miRNA genes:153
Interacting mature miRNAs:159
Transcripts:ENSMUST00000159313, ENSMUST00000160001
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 31 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
10412251Mnp_mmodifier of Niemann Pick type C1 (mouse)Not determined192023431454234461Mouse
1302170Tanidd1_mtally ho associated non-insulin dependednt diabetes mellitus 1 (mouse)Not determined193675259761420004Mouse
1301466T2dm2_mtype 2 diabetes mellitus 2 (mouse)Not determined193837605061420004Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191591260749912719Mouse
1558876W3q14_mweight 3 weeks QTL 14 (mouse)Not determined192231332653911504Mouse
1302104Lfp1_mlong free running period 1 (mouse)Not determined193918406461420004Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191591260749912719Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse

1 to 10 of 31 rows






Ensembl Acc Id: ENSMUST00000159313
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1942,767,471 - 42,769,893 (+)Ensembl
GRCm38.p6 Ensembl1942,779,032 - 42,781,454 (+)Ensembl
Ensembl Acc Id: ENSMUST00000160001
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1942,767,549 - 42,768,700 (+)Ensembl
GRCm38.p6 Ensembl1942,779,110 - 42,780,261 (+)Ensembl
Ensembl Acc Id: ENSMUST00000286636
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1942,768,141 - 42,771,878 (+)Ensembl
Ensembl Acc Id: ENSMUST00000286637
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1942,768,142 - 42,770,022 (+)Ensembl
Ensembl Acc Id: ENSMUST00000286638
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1942,769,507 - 42,769,890 (+)Ensembl
RefSeq Acc Id: XR_386720
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391942,767,471 - 42,769,887 (+)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000090235 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000159313 ENTREZGENE
MGD MGI:3802128 ENTREZGENE
NCBI Gene Gm16244 ENTREZGENE
PhenoGen Gm16244 PhenoGen
RNAcentral URS00009BE716 RNACentral
  URS00009C5DF0 RNACentral