Gm13778 (predicted gene 13778) - Rat Genome Database

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Gene: Gm13778 (predicted gene 13778) Mus musculus
Analyze
Symbol: Gm13778
Name: predicted gene 13778
RGD ID: 5146388
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39290,874,427 - 90,884,265 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl290,861,563 - 90,884,433 (-)EnsemblGRCm39 Ensembl
GRCm38291,031,798 - 91,054,009 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl291,044,092 - 91,053,933 (-)EnsemblGRCm38mm10GRCm38
MGSCv37290,884,995 - 90,885,886 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera292,429,357 - 92,430,248 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:24200680   PMID:27899360  


Genomics

Variants

.
Variants in Gm13778
541 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:230
Count of miRNA genes:172
Interacting mature miRNAs:183
Transcripts:ENSMUST00000144822, ENSMUST00000146633
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286095716120095823Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286095716120095823Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288015003122015170Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287440643121440778Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
1558901Skmw8_mskeletal muscle weight 8 (mouse)Not determined284008488118008593Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
4141657Mohg1_mmodifier of hg 1 (mouse)Not determined276678758103095823Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286095716120095823Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268724269102724407Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276421483110421651Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268724269102724407Mouse
10043894Bw22_mbody weight QTL 22 (mouse)Not determined280895334114895334Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
15092054Egrme5_mearly growth rate, maternal effect 5 (mouse)282190187118004745Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88143423122143570Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286095716120095823Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267647887101648142Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74524117114123532Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse

Markers in Region
J03962  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38291,045,595 - 91,045,696UniSTSGRCm38
MGSCv37290,885,752 - 90,885,853UniSTSGRCm37
Celera292,430,114 - 92,430,215UniSTS
Cytogenetic Map2E1UniSTS
cM Map247.5UniSTS
Whitehead_YAC2 UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000144822
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl290,874,435 - 90,884,295 (-)Ensembl
GRCm38.p6 Ensembl291,044,395 - 91,053,933 (-)Ensembl
Ensembl Acc Id: ENSMUST00000146633
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl290,874,425 - 90,884,315 (-)Ensembl
GRCm38.p6 Ensembl291,044,092 - 91,053,918 (-)Ensembl
Ensembl Acc Id: ENSMUST00000359604
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl290,861,563 - 90,884,265 (-)Ensembl
Ensembl Acc Id: ENSMUST00000359605
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl290,869,598 - 90,884,433 (-)Ensembl
Ensembl Acc Id: ENSMUST00000359606
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl290,869,601 - 90,884,319 (-)Ensembl
Ensembl Acc Id: ENSMUST00000359607
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl290,874,426 - 90,884,330 (-)Ensembl
Ensembl Acc Id: ENSMUST00000359608
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl290,874,427 - 90,884,240 (-)Ensembl
Ensembl Acc Id: ENSMUST00000359609
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl290,876,803 - 90,884,272 (-)Ensembl
Ensembl Acc Id: ENSMUST00000359610
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl290,880,862 - 90,884,295 (-)Ensembl
Ensembl Acc Id: ENSMUST00000359611
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl290,880,862 - 90,884,278 (-)Ensembl
Ensembl Acc Id: ENSMUST00000359612
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl290,880,868 - 90,884,253 (-)Ensembl
RefSeq Acc Id: NR_190157
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39290,874,427 - 90,884,265 (-)NCBI
RefSeq Acc Id: NR_190158
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39290,874,427 - 90,884,265 (-)NCBI
RefSeq Acc Id: NR_190159
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39290,874,427 - 90,884,265 (-)NCBI
RefSeq Acc Id: NR_190160
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39290,880,863 - 90,884,265 (-)NCBI
RefSeq Acc Id: NR_190161
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39290,880,863 - 90,884,265 (-)NCBI
Promoters
RGD ID:15092381
Promoter ID:EPDNEWNC_M281
Type:single initiation site
Name:Gm13778_1
Description:predicted gene 13778 [Source:MGI Symbol;Acc:MGI:3649233]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38291,053,918 - 91,053,978EPDNEWNC
RGD ID:6877878
Promoter ID:EPDNEW_M2390
Type:multiple initiation site
Name:AK020549_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38291,053,918 - 91,053,978EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086495 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000144822 ENTREZGENE
  ENSMUST00000146633 ENTREZGENE
  ENSMUST00000359607 ENTREZGENE
  ENSMUST00000359610 ENTREZGENE
  ENSMUST00000359611 ENTREZGENE
MGD MGI:3649233 ENTREZGENE
NCBI Gene Gm13778 ENTREZGENE
PhenoGen Gm13778 PhenoGen
RNAcentral URS00009B01D6 RNACentral
  URS0000EF683D RNACentral
  URS00028539E4 RNACentral
  URS0002853A91 RNACentral
  URS0002853AD9 RNACentral
  URS0002853B0F RNACentral
  URS0002853B19 RNACentral