Gm10015 (predicted gene 10015) - Rat Genome Database

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Gene: Gm10015 (predicted gene 10015) Mus musculus
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Symbol: Gm10015
Name: predicted gene 10015
RGD ID: 5142108
MGI Page MGI
Description:
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: ENSMUSG00000056943; ubiquitin-conjugating enzyme E2 L3-like
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39861,816,860 - 61,818,658 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl861,817,053 - 61,817,517 (-)EnsemblGRCm39 Ensembl
GRCm38861,363,827 - 61,365,624 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl861,364,019 - 61,364,483 (-)EnsemblGRCm38mm10GRCm38
MGSCv37863,842,816 - 63,843,280 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera863,916,296 - 63,931,353 (-)NCBICelera
Cytogenetic Map8B3.1NCBI
cM Map830.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm10015
166 total Variants

Predicted Target Of
Summary Value
Count of predictions:113
Count of miRNA genes:108
Interacting mature miRNAs:112
Transcripts:ENSMUST00000072570
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 25 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81477316071498244Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3250657271740637Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84809006482090180Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84924559183245673Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
14746987Manh64_mmandible shape 64 (mouse)85050595884505958Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3250657271740637Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84809006482090180Mouse

1 to 10 of 25 rows





RefSeq Transcripts XM_036154427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000072570
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl861,817,053 - 61,817,517 (-)Ensembl
GRCm38.p6 Ensembl861,364,019 - 61,364,483 (-)Ensembl
RefSeq Acc Id: XM_036154427   ⟹   XP_036010320
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39861,816,860 - 61,818,658 (-)NCBI
Sequence:
Protein RefSeqs XP_036010320 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_036010320   ⟸   XM_036154427



Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000056943 Ensembl
MGD MGI:3809114 ENTREZGENE
NCBI Gene 100502680 ENTREZGENE
PhenoGen Gm10015 PhenoGen