Gm19426 (predicted gene, 19426) - Rat Genome Database

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Gene: Gm19426 (predicted gene, 19426) Mus musculus
Analyze
Symbol: Gm19426
Name: predicted gene, 19426
RGD ID: 5141661
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39284,568,463 - 84,574,746 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl284,572,508 - 84,574,945 (-)EnsemblGRCm39 Ensembl
GRCm38284,742,165 - 84,744,402 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl284,742,169 - 84,743,655 (-)EnsemblGRCm38mm10GRCm38
MGSCv37284,582,326 - 84,583,812 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera286,337,364 - 86,338,850 (-)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12520002   PMID:12904583   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693  



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Variants in Gm19426
264 total Variants

Predicted Target Of
Summary Value
Count of predictions:182
Count of miRNA genes:159
Interacting mature miRNAs:168
Transcripts:ENSMUST00000181711
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 45 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25244801986448136Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25170327685703425Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse

1 to 10 of 45 rows





RefSeq Transcripts XR_104776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK033350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL928914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000181711   ⟹   ENSMUSP00000137761
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl284,572,508 - 84,574,141 (-)Ensembl
GRCm38.p6 Ensembl284,742,169 - 84,743,655 (-)Ensembl
Ensembl Acc Id: ENSMUST00000296935
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl284,572,512 - 84,574,945 (-)Ensembl
Ensembl Acc Id: ENSMUST00000296936
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl284,572,511 - 84,574,760 (-)Ensembl
Ensembl Acc Id: ENSMUST00000296937
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl284,572,509 - 84,574,113 (-)Ensembl
Ensembl Acc Id: ENSMUST00000296938
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl284,572,509 - 84,574,103 (-)Ensembl
Ensembl Acc Id: ENSMUST00000296939
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl284,572,513 - 84,573,552 (-)Ensembl
Ensembl Acc Id: ENSMUST00000296940
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl284,572,509 - 84,573,443 (-)Ensembl
RefSeq Acc Id: XR_104776
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39284,568,463 - 84,574,746 (-)NCBI
GRCm38284,742,165 - 84,744,402 (-)NCBI
MGSCv37284,582,326 - 84,583,812 (-)ENTREZGENE
cM Map2 ENTREZGENE
Sequence:
Name Modeler Protein Id AA Range Protein Structure
AF-M0QWC7-F1-model_v2 AlphaFold M0QWC7 1-77 view protein structure



Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000097187 Ensembl
MGD MGI:5011611 ENTREZGENE
NCBI Gene 100502874 ENTREZGENE
PhenoGen Gm19426 PhenoGen
RNAcentral URS00027EFB43 RNACentral