METTL21AP1 (methyltransferase like 21A pseudogene 1) - Rat Genome Database

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Gene: METTL21AP1 (methyltransferase like 21A pseudogene 1) Homo sapiens
Analyze
Symbol: METTL21AP1
Name: methyltransferase like 21A pseudogene 1
RGD ID: 5132551
HGNC Page HGNC:41921
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: METTL21A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382139,235,328 - 39,236,050 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2139,235,386 - 39,236,020 (-)EnsemblGRCh38hg38GRCh38
GRCh372140,607,254 - 40,607,976 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera2125,804,964 - 25,805,583 (-)NCBICelera
Cytogenetic Map21q22.2NCBI
HuRef2126,077,248 - 26,077,867 (-)NCBIHuRef
CHM1_12140,168,656 - 40,169,275 (-)NCBICHM1_1
T2T-CHM13v2.02137,619,876 - 37,620,598 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:69
Count of miRNA genes:68
Interacting mature miRNAs:69
Transcripts:ENST00000438852
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
ECD06177  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372140,607,267 - 40,607,982UniSTSGRCh37
Build 362139,529,137 - 39,529,852RGDNCBI36
Celera2125,804,904 - 25,805,619RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,077,188 - 26,077,903UniSTS
ECD06352  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372140,608,023 - 40,608,733UniSTSGRCh37
Build 362139,529,893 - 39,530,603RGDNCBI36
Celera2125,805,660 - 25,806,370RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,077,944 - 26,078,654UniSTS
ECD09437  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372140,608,784 - 40,609,412UniSTSGRCh37
Build 362139,530,654 - 39,531,282RGDNCBI36
Celera2125,806,421 - 25,807,049RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,078,705 - 26,079,333UniSTS
REN19760  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372140,607,038 - 40,607,264UniSTSGRCh37
Build 362139,528,908 - 39,529,134RGDNCBI36
Celera2125,804,675 - 25,804,901RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,076,959 - 26,077,185UniSTS
REN19761  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372140,607,256 - 40,607,498UniSTSGRCh37
Build 362139,529,126 - 39,529,368RGDNCBI36
Celera2125,804,893 - 25,805,135RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,077,177 - 26,077,419UniSTS
REN19762  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372140,607,479 - 40,607,728UniSTSGRCh37
Build 362139,529,349 - 39,529,598RGDNCBI36
Celera2125,805,116 - 25,805,365RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,077,400 - 26,077,649UniSTS
REN19763  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372140,607,707 - 40,607,932UniSTSGRCh37
Build 362139,529,577 - 39,529,802RGDNCBI36
Celera2125,805,344 - 25,805,569RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,077,628 - 26,077,853UniSTS
REN19764  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372140,607,911 - 40,608,162UniSTSGRCh37
Build 362139,529,781 - 39,530,032RGDNCBI36
Celera2125,805,548 - 25,805,799RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,077,832 - 26,078,083UniSTS
REN19765  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372140,608,131 - 40,608,365UniSTSGRCh37
Build 362139,530,001 - 39,530,235RGDNCBI36
Celera2125,805,768 - 25,806,002RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,078,052 - 26,078,286UniSTS
REN19766  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372140,608,346 - 40,608,589UniSTSGRCh37
Build 362139,530,216 - 39,530,459RGDNCBI36
Celera2125,805,983 - 25,806,226RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,078,267 - 26,078,510UniSTS
REN19767  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372140,608,539 - 40,608,805UniSTSGRCh37
Build 362139,530,409 - 39,530,675RGDNCBI36
Celera2125,806,176 - 25,806,442RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,078,460 - 26,078,726UniSTS
REN19768  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372140,608,781 - 40,609,025UniSTSGRCh37
Build 362139,530,651 - 39,530,895RGDNCBI36
Celera2125,806,418 - 25,806,662RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,078,702 - 26,078,946UniSTS
REN19769  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372140,609,001 - 40,609,244UniSTSGRCh37
Build 362139,530,871 - 39,531,114RGDNCBI36
Celera2125,806,638 - 25,806,881RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,078,922 - 26,079,165UniSTS
REN19770  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372140,609,221 - 40,609,446UniSTSGRCh37
Build 362139,531,091 - 39,531,316RGDNCBI36
Celera2125,806,858 - 25,807,083RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,079,142 - 26,079,367UniSTS
REN19771  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372140,609,418 - 40,609,664UniSTSGRCh37
Build 362139,531,288 - 39,531,534RGDNCBI36
Celera2125,807,055 - 25,807,301RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,079,339 - 26,079,585UniSTS
REN19772  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372140,609,663 - 40,609,919UniSTSGRCh37
Build 362139,531,533 - 39,531,789RGDNCBI36
Celera2125,807,300 - 25,807,556RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,079,584 - 26,079,840UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 15 38 28 3 126 3 108 18 53 7 36 43 13 61 2
Below cutoff 648 703 516 162 464 94 1424 465 1067 102 568 554 72 349 862 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000438852
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2139,235,386 - 39,236,020 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC METTL21AP1 COSMIC
Ensembl Genes ENSG00000229623 Ensembl, ENTREZGENE
GTEx ENSG00000229623 GTEx
HGNC ID HGNC:41921 ENTREZGENE
Human Proteome Map METTL21AP1 Human Proteome Map
NCBI Gene 100421629 ENTREZGENE