NBEAP3 (neurobeachin pseudogene 3) - Rat Genome Database

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Pathways
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Gene: NBEAP3 (neurobeachin pseudogene 3) Homo sapiens
Analyze
Symbol: NBEAP3
Name: neurobeachin pseudogene 3
RGD ID: 5131737
HGNC Page HGNC:40004
Description: INTERACTS WITH methylparaben
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: BCL8C
Related Functional Gene: NBEA  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382215,852,989 - 15,876,688 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2215,852,990 - 15,893,942 (+)EnsemblGRCh38hg38GRCh38
GRCh372216,101,275 - 16,124,974 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map22q11.1NCBI
CHM1_12216,101,238 - 16,124,491 (-)NCBICHM1_1
T2T-CHM13v2.02216,427,024 - 16,450,735 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:12160729  


Genomics

Variants

.
Variants in NBEAP3
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:90
Interacting mature miRNAs:90
Transcripts:ENST00000420638
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 25 18 10 28 11 11 31 26 12 57 61 1
Low 78 86 73 122 76 80 22 74 92 141 158 4 1 3
Below cutoff 144 170 225 79 157 70 343 107 527 118 310 177 9 207 188 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000420638
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2215,852,990 - 15,893,942 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC NBEAP3 COSMIC
Ensembl Genes ENSG00000223875 Ensembl
GTEx ENSG00000223875 GTEx
HGNC ID HGNC:40004 ENTREZGENE
Human Proteome Map NBEAP3 Human Proteome Map
NCBI Gene 100418905 ENTREZGENE